RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 DUOXA2Q1HG44 320 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 PRSS36Q5K4E3 855 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 LIMS2Q7Z4I7 341 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 LRRTM3Q86VH5 581 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 WDR49Q8IV35 697 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 NPAS3Q8IXF0 933 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 PDCL2Q8N4E4 241 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 ATAD1Q8NBU5 361 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 ST13P5Q8NFI4 369 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 PLEKHO2Q8TD55 490 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 ZNF516Q92618 1163 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 NXPE3Q969Y0 559 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 MFSD14AQ96MC6 490 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 ZNF560Q96MR9 790 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 RPP25Q9BUL9 199 aaKnown RBP11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 DNAJC25Q9H1X3 360 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 GDAP2Q9NXN4 497 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 L1RE1Q9UN81 338 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 DUSP12Q9UNI6 340 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 YIPF1Q9Y548 306 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 CITO14578 2027 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 DENND4AQ7Z401 1863 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 NARSO43776 548 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 MOSPD3O75425 235 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 CCR2P41597 374 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 EPHA5P54756 1037 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 SNW1Q13573 536 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 PARM1Q6UWI2 310 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 TRAPPC11Q7Z392 1133 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 OSTM1Q86WC4 334 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 METTL23Q86XA0 190 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 SLC9A9Q8IVB4 645 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 HS6ST3Q8IZP7 471 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 FMR1NBQ8N0W7 255 aaPredicted RBP11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 FBXL6Q8N531 539 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 TTC9BQ8N6N2 239 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 ENGASEQ8NFI3 743 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 GOLGA5Q8TBA6 731 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 FGF14Q92915 247 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 TCEAL4Q96EI5 215 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 ANKRD36BP1Q96IX9 119 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 CORO1BQ9BR76 489 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 LRRC3Q9BY71 257 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 HSFX1Q9UBD0 423 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 SLC27A5Q9Y2P5 690 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 MRPS23Q9Y3D9 190 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 NUMBLQ9Y6R0 609 aa11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 PDCD11Q14690 1871 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-206ENST00000553437 PDXKO00764 312 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 GABRDO14764 452 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 EXOC3O60645 756 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 SOAT2O75908 522 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 MICAL2O94851 1124 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 CST3P01034 146 aaPredicted RBP11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 TNNC2P02585 160 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 KRT19P08727 400 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 DLATP10515 647 aaKnown RBP11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 CEBPBP17676 345 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 CLDN10P78369 228 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 BFSP1Q12934 665 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 KCNB1Q14721 858 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 SOWAHAQ2M3V2 549 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 SLC39A12Q504Y0 691 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 TMC8Q8IU68 726 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 THEM5Q8N1Q8 247 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 TOP6BLQ8N6T0 577 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 ING5Q8WYH8 240 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 CCDC127Q96BQ5 260 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 MCRS1Q96EZ8 462 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 HPDLQ96IR7 371 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 ZNF512Q96ME7 567 aaPredicted RBP11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 PKMYT1Q99640 499 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 CGRRF1Q99675 332 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 TMLHEQ9NVH6 421 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 GDE1Q9NZC3 331 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 SNX9Q9Y5X1 595 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 C2orf16Q68DN1 1984 aa11.05□□□□□ -0.64
CCDC88C-206ENST00000553437 ZNF197O14709 1029 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 HUS1O60921 280 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 PRPF40AO75400 957 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 SRFP11831 508 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 TNNI1P19237 187 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 CASP4P49662 377 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 CDR1P51861 262 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 VCPP55072 806 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 SMARCB1Q12824 385 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 PLD1Q13393 1074 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 IQCEQ6IPM2 695 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 TMEM86AQ8N2M4 240 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 ELMOD1Q8N336 334 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 LEMD2Q8NC56 503 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 SPATA18Q8TC71 538 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 PARD3BQ8TEW8 1205 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 C2orf15Q8WU43 125 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 KBTBD7Q8WVZ9 684 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 FNBP1Q96RU3 617 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 ACBD6Q9BR61 282 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 DDX43Q9NXZ2 648 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 TRAF3IP3Q9Y228 551 aa11.04□□□□□ -0.64
CCDC88C-206ENST00000553437 MTCL1Q9Y4B5 1905 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms