RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 USP28Q96RU2 1077 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 SEPT5Q99719 369 aaPredicted RBP13.77□□□□□ -0.21
LINC00643-202ENST00000553426 HINFPQ9BQA5 517 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 FAM213AQ9BRX8 229 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 BACH2Q9BYV9 841 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 ATXN3LQ9H3M9 355 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 TMEM206Q9H813 350 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 ZNF334Q9HCZ1 680 aaPredicted RBP13.77□□□□□ -0.21
LINC00643-202ENST00000553426 TRPV5Q9NQA5 729 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 FOXD4L1Q9NU39 408 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 PANK4Q9NVE7 773 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 FBXO4Q9UKT5 387 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 MTMR6Q9Y217 621 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 R4GN57 208 aa13.77□□□□□ -0.21
LINC00643-202ENST00000553426 KPNA7A9QM74 516 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 KINO60870 393 aaKnown RBP13.76□□□□□ -0.21
LINC00643-202ENST00000553426 VNN2O95498 520 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 PDIA4P13667 645 aaKnown RBP13.76□□□□□ -0.21
LINC00643-202ENST00000553426 GARTP22102 1010 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 TARSP26639 723 aaKnown RBP13.76□□□□□ -0.21
LINC00643-202ENST00000553426 ADSSP30520 456 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 VIPR2P41587 438 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 RPS9P46781 194 aaKnown RBP13.76□□□□□ -0.21
LINC00643-202ENST00000553426 AMPD3Q01432 767 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 TSPY1Q01534 308 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 PPP2R5DQ14738 602 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 ZNF528Q3MIS6 628 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 MGAT5BQ3V5L5 792 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 C1orf228Q6PIY5 440 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 VITQ6UXI7 678 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 DNAJB7Q7Z6W7 309 aaPredicted RBP13.76□□□□□ -0.21
LINC00643-202ENST00000553426 PDILTQ8N807 584 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 SHKBP1Q8TBC3 707 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 NOC3LQ8WTT2 800 aaKnown RBP13.76□□□□□ -0.21
LINC00643-202ENST00000553426 ATRIPQ8WXE1 791 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 STRA6Q9BX79 667 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 ZCWPW1Q9H0M4 648 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 MTF2Q9Y483 593 aaPredicted RBP13.76□□□□□ -0.21
LINC00643-202ENST00000553426 FAM186AA6NE01 2351 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 WDR87Q6ZQQ6 2873 aa13.76□□□□□ -0.21
LINC00643-202ENST00000553426 HEPACAM2A8MVW5 462 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 KIAA0391O15091 583 aaKnown RBP13.75□□□□□ -0.21
LINC00643-202ENST00000553426 HUS1O60921 280 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 MOSPD3O75425 235 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 HSP90AA1P07900 732 aaKnown RBP13.75□□□□□ -0.21
LINC00643-202ENST00000553426 GABRR2P28476 465 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 CDC25CP30307 473 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 NASPP49321 788 aaPredicted RBP13.75□□□□□ -0.21
LINC00643-202ENST00000553426 CSTF1Q05048 431 aaKnown RBP13.75□□□□□ -0.21
LINC00643-202ENST00000553426 KCNA1Q09470 495 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 WSCD1Q658N2 575 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 POTEHQ6S545 545 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 CRELD2Q6UXH1 353 aaPredicted RBP13.75□□□□□ -0.21
LINC00643-202ENST00000553426 TMC8Q8IU68 726 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 BRSK2Q8IWQ3 736 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 OR10T2Q8NGX3 314 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 SPPL2BQ8TCT7 592 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 CLDN23Q96B33 292 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 MSANTD3Q96H12 275 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 TMEM209Q96SK2 561 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 DNAJC25Q9H1X3 360 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 CRISPLD1Q9H336 500 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 RBAKQ9NYW8 714 aaPredicted RBP13.75□□□□□ -0.21
LINC00643-202ENST00000553426 ZMYM5Q9UJ78 669 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 NDRG2Q9UN36 371 aaKnown RBP13.75□□□□□ -0.21
LINC00643-202ENST00000553426 PIAS3Q9Y6X2 628 aa13.75□□□□□ -0.21
LINC00643-202ENST00000553426 MIA3Q5JRA6 1907 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 FRMD3A2A2Y4 597 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 SPTLC2O15270 562 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 CHADO15335 359 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 EXTL3O43909 919 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 POLR2BP30876 1174 aaKnown RBP13.74□□□□□ -0.21
LINC00643-202ENST00000553426 MLLT6P55198 1093 aaPredicted RBP13.74□□□□□ -0.21
LINC00643-202ENST00000553426 NFE2Q16621 373 aaPredicted RBP13.74□□□□□ -0.21
LINC00643-202ENST00000553426 GPR158Q5T848 1215 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 ARID3BQ8IVW6 561 aaPredicted RBP13.74□□□□□ -0.21
LINC00643-202ENST00000553426 EFCAB13Q8IY85 973 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 FAM3CQ92520 227 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 SAAL1Q96ER3 474 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 IER2Q9BTL4 223 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 LRRC3Q9BY71 257 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 TNMDQ9H2S6 317 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 CUEDC2Q9H467 287 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 AGAP1Q9UPQ3 857 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 PCDHB5Q9Y5E4 795 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 PCDHGA2Q9Y5H1 932 aa13.74□□□□□ -0.21
LINC00643-202ENST00000553426 PPP6R2O75170 966 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 SOAT2O75908 522 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 PRPF6O94906 941 aaKnown RBP13.73□□□□□ -0.21
LINC00643-202ENST00000553426 ITGB3P05106 788 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 KRT19P08727 400 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 TMEM191BP0C7N4 346 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 KPNA1P52294 538 aaPredicted RBP13.73□□□□□ -0.21
LINC00643-202ENST00000553426 RBP5P82980 135 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 MYL7Q01449 175 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 FCHO2Q0JRZ9 810 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 SURF1Q15526 300 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 ARHGAP29Q52LW3 1261 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 GAREM2Q75VX8 874 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 TMEM86AQ8N2M4 240 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms