RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 GUCY2FP51841 1108 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 GTF2BQ00403 316 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 SMARCB1Q12824 385 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 TMEM132DQ14C87 1099 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 C8orf34Q49A92 452 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 ARHGAP29Q52LW3 1261 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 ARHGAP15Q53QZ3 475 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 DGKKQ5KSL6 1271 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 C9orf57Q5W0N0 161 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 LAIR1Q6GTX8 287 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 JADE1Q6IE81 842 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 GAREM2Q75VX8 874 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 DNAJB7Q7Z6W7 309 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-221ENST00000550914 RALGPS2Q86X27 583 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-221ENST00000550914 ARID3BQ8IVW6 561 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-221ENST00000550914 TMEM130Q8N3G9 435 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 ATAD1Q8NBU5 361 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 RSPRY1Q96DX4 576 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 TMX3Q96JJ7 454 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 MKNK1Q9BUB5 465 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 ST6GALNAC4Q9H4F1 302 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 BLOC1S4Q9NUP1 217 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 ZMYM5Q9UJ78 669 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 C2CD2Q9Y426 696 aa13.93□□□□□ -0.18
PTCH1-221ENST00000550914 KMT2BQ9UMN6 2715 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-221ENST00000550914 PPEF2O14830 753 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 CNR2P34972 360 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 LONP1P36776 959 aaKnown RBP13.92□□□□□ -0.18
PTCH1-221ENST00000550914 KPNA1P52294 538 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-221ENST00000550914 PLCB2Q00722 1185 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 SLFN12LQ6IEE8 588 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 SLC39A4Q6P5W5 647 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 SYNPOQ8N3V7 929 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 C2orf15Q8WU43 125 aaKnown RBP13.92□□□□□ -0.18
PTCH1-221ENST00000550914 RAD54LQ92698 747 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 FIZ1Q96SL8 496 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 CCSER1Q9C0I3 900 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 ATXN3LQ9H3M9 355 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 CDV3Q9UKY7 258 aaKnown RBP13.92□□□□□ -0.18
PTCH1-221ENST00000550914 SLC27A5Q9Y2P5 690 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 STYXL1Q9Y6J8 313 aa13.92□□□□□ -0.18
PTCH1-221ENST00000550914 OBSL1O75147 1896 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 SPECC1L-ADORA2AF8WAN1 911 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 DPYSL4O14531 572 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 TBCAO75347 108 aaKnown RBP13.91□□□□□ -0.18
PTCH1-221ENST00000550914 KRT18P05783 430 aaKnown RBP13.91□□□□□ -0.18
PTCH1-221ENST00000550914 RETP07949 1114 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 NFICP08651 508 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 PLCG1P19174 1290 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 GABRR2P28476 465 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 CDC25CP30307 473 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 HOXA6P31267 233 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 CTHP32929 405 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 MCM2P49736 904 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 GAS6Q14393 721 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 VEPH1Q14D04 833 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 STXBP5Q5T5C0 1151 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 GPR158Q5T848 1215 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 BRAPQ7Z569 592 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 TTC9BQ8N6N2 239 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 OR10T2Q8NGX3 314 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 LRRC15Q8TF66 581 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 FAM212AQ96EL1 285 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 RTKNQ9BST9 563 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 ZCWPW1Q9H0M4 648 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 TASP1Q9H6P5 420 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 USP18Q9UMW8 372 aa13.91□□□□□ -0.18
PTCH1-221ENST00000550914 LAMA1P25391 3075 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 SLC38A8A6NNN8 435 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 TAF6P49848 677 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 ATXN1P54253 815 aaKnown RBP13.9□□□□□ -0.18
PTCH1-221ENST00000550914 SATB1Q01826 763 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 DHX8Q14562 1220 aaKnown RBP13.9□□□□□ -0.18
PTCH1-221ENST00000550914 MCM6Q14566 821 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 SLC39A12Q504Y0 691 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 METTL23Q86XA0 190 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 NT5DC4Q86YG4 428 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 THEM5Q8N1Q8 247 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 FAM200AQ8TCP9 573 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 SPPL2BQ8TCT7 592 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 LARP4BQ92615 738 aaKnown RBP13.9□□□□□ -0.18
PTCH1-221ENST00000550914 HVCN1Q96D96 273 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 LRRC3BQ96PB8 259 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 GCNAQ96QF7 691 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 TMEM209Q96SK2 561 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 PARD6AQ9NPB6 346 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 THG1LQ9NWX6 298 aaKnown RBP13.9□□□□□ -0.18
PTCH1-221ENST00000550914 MAP1BP46821 2468 aaKnown RBP13.9□□□□□ -0.18
PTCH1-221ENST00000550914 GREB1Q4ZG55 1949 aa13.9□□□□□ -0.18
PTCH1-221ENST00000550914 ATG2BQ96BY7 2078 aa13.89□□□□□ -0.19
PTCH1-221ENST00000550914 SOBPA7XYQ1 873 aa13.89□□□□□ -0.19
PTCH1-221ENST00000550914 K7ESF4 209 aa13.89□□□□□ -0.19
PTCH1-221ENST00000550914 CYB561D2O14569 222 aa13.89□□□□□ -0.19
PTCH1-221ENST00000550914 FOXD2O60548 495 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-221ENST00000550914 IL18RAPO95256 599 aa13.89□□□□□ -0.19
PTCH1-221ENST00000550914 ATF6P18850 670 aa13.89□□□□□ -0.19
PTCH1-221ENST00000550914 NMT1P30419 496 aaKnown RBP13.89□□□□□ -0.19
PTCH1-221ENST00000550914 DDIT3P35638 169 aa13.89□□□□□ -0.19
PTCH1-221ENST00000550914 ACOT2P49753 483 aa13.89□□□□□ -0.19
PTCH1-221ENST00000550914 CCINQ13939 588 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms