RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 AP5Z1O43299 807 aa22.68■■□□□ 1.22
VPS29-206ENST00000549578 RPL17P18621 184 aaKnown RBP22.68■■□□□ 1.22
VPS29-206ENST00000549578 FXR1P51114 621 aaKnown RBP eCLIP22.68■■□□□ 1.22
VPS29-206ENST00000549578 CUL2Q13617 745 aa22.68■■□□□ 1.22
VPS29-206ENST00000549578 MRPL58Q14197 206 aaKnown RBP22.68■■□□□ 1.22
VPS29-206ENST00000549578 SMC1AQ14683 1233 aaKnown RBP22.68■■□□□ 1.22
VPS29-206ENST00000549578 PSMD5Q16401 504 aa22.68■■□□□ 1.22
VPS29-206ENST00000549578 DPY19L2P1Q6NXN4 242 aa22.68■■□□□ 1.22
VPS29-206ENST00000549578 ANKS3Q6ZW76 656 aa22.68■■□□□ 1.22
VPS29-206ENST00000549578 TMEM86AQ8N2M4 240 aa22.68■■□□□ 1.22
VPS29-206ENST00000549578 PCMTD1Q96MG8 357 aaPredicted RBP22.68■■□□□ 1.22
VPS29-206ENST00000549578 ERGIC2Q96RQ1 377 aa22.68■■□□□ 1.22
VPS29-206ENST00000549578 APEX2Q9UBZ4 518 aa22.68■■□□□ 1.22
VPS29-206ENST00000549578 HCRTO43612 131 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 LILRB3O75022 631 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 TACC1O75410 805 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 OAZ2O95190 189 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 CD58P19256 250 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 CTXN3Q4LDR2 81 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 RTP3Q9BQQ7 232 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 NGRNQ9NPE2 291 aaKnown RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 FAM207AQ9NSI2 230 aaPredicted RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 WARSP23381 471 aaKnown RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 BMS1Q14692 1282 aaKnown RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 PTPROQ16827 1216 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 ZNF280DQ6N043 979 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 GPR153Q6NV75 609 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 RSPO2Q6UXX9 243 aaPredicted RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 MRPL43Q8N983 215 aaKnown RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 OR6B3Q8NGW1 331 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 MRPL38Q96DV4 380 aaKnown RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 FAXDC2Q96IV6 333 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 KREMEN1Q96MU8 473 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 SNX25Q9H3E2 840 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 CYP3A43Q9HB55 503 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 UBE2TQ9NPD8 197 aaPredicted RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 DDX43Q9NXZ2 648 aaKnown RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 MTRRQ9UBK8 725 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 AJAP1Q9UKB5 411 aaPredicted RBP22.67■■□□□ 1.22
VPS29-206ENST00000549578 NME7Q9Y5B8 376 aa22.67■■□□□ 1.22
VPS29-206ENST00000549578 C2orf71A6NGG8 1288 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 H7C4K7 107 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 GABRDO14764 452 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 TBXAS1P24557 533 aaPredicted RBP22.66■■□□□ 1.22
VPS29-206ENST00000549578 ACAT1P24752 427 aaKnown RBP22.66■■□□□ 1.22
VPS29-206ENST00000549578 LMO2P25791 158 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 GCNT1Q02742 428 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 ADGRE1Q14246 886 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 KLHDC7AQ5VTJ3 777 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 GLYCTKQ8IVS8 523 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 OR10T2Q8NGX3 314 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 FBXL5Q9UKA1 691 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 SSX2IPQ9Y2D8 614 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 IRAK3Q9Y616 596 aa22.66■■□□□ 1.22
VPS29-206ENST00000549578 EPHB6O15197 1021 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 ADAM12O43184 909 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 TBC1D4O60343 1298 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 CNPP09543 421 aaKnown RBP22.65■■□□□ 1.22
VPS29-206ENST00000549578 PDGFRBP09619 1106 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 GNL1P36915 607 aaPredicted RBP22.65■■□□□ 1.22
VPS29-206ENST00000549578 LHX1P48742 406 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 PDE12Q6L8Q7 609 aaKnown RBP22.65■■□□□ 1.22
VPS29-206ENST00000549578 PDXDC1Q6P996 788 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 SARM1Q6SZW1 724 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 GPR65Q8IYL9 337 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 THEM5Q8N1Q8 247 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 SPATA18Q8TC71 538 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 TMEM209Q96SK2 561 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 CLSTN3Q9BQT9 956 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 GANQ9H2C0 597 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 PLCB1Q9NQ66 1216 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 CISHQ9NSE2 258 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 HMGXB4Q9UGU5 601 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 BACE2Q9Y5Z0 518 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 FHOD1Q9Y613 1164 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 CDY1Q9Y6F8 540 aa22.65■■□□□ 1.22
VPS29-206ENST00000549578 TEX28O15482 410 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 CBFA2T2O43439 604 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 NOL4O94818 638 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 FAM163BP0C2L3 166 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 NDST1P52848 882 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 UVSSAQ2YD98 709 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 IQCEQ6IPM2 695 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 ADGRD2Q7Z7M1 963 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 RXFP1Q9HBX9 757 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.64■■□□□ 1.21
VPS29-206ENST00000549578 DNAJC12Q9UKB3 198 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 STXBP5LQ9Y2K9 1186 aa22.64■■□□□ 1.21
VPS29-206ENST00000549578 A0A1W2PQC6 194 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 A8MXQ7 604 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 TPM3P06753 285 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 OR4Q2P0C623 313 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 UCHL3P15374 230 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 ARPP19P56211 112 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 INCA1Q0VD86 236 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 ORC1Q13415 861 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 ARHGAP44Q17R89 818 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 DEFB123Q8N688 67 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 NEK11Q8NG66 645 aa22.63■■□□□ 1.21
VPS29-206ENST00000549578 TWNKQ96RR1 684 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms