RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 C3orf62Q6ZUJ4 267 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 CRLF3Q8IUI8 442 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 AGR3Q8TD06 166 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 RNF19AQ9NV58 838 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 GPATCH2LQ9NWQ4 482 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 PSD3Q9NYI0 1048 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 RGPD1P0DJD0 1748 aa17.11■□□□□ 0.33
CUX1-213ENST00000549414 SH3BP5O60239 455 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 MYLK4Q86YV6 388 aaPredicted RBP17.1■□□□□ 0.33
CUX1-213ENST00000549414 SLC12A6Q9UHW9 1150 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 LCMT1Q9UIC8 334 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 UPP2O95045 317 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 IL18RAPO95256 599 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 ITGB3BPQ13352 177 aaPredicted RBP17.1■□□□□ 0.33
CUX1-213ENST00000549414 LAMC2Q13753 1193 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 MPZL3Q6UWV2 235 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 METTL7BQ6UX53 244 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 SYDE1Q6ZW31 735 aaPredicted RBP17.1■□□□□ 0.33
CUX1-213ENST00000549414 TTC39CQ8N584 583 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 BCAS3Q9H6U6 928 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 VAV3Q9UKW4 847 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 CFLARO15519 480 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 FNTAP49354 379 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 CDH8P55286 799 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 AGBL2Q5U5Z8 902 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 CDKL3Q8IVW4 592 aaPredicted RBP17.1■□□□□ 0.33
CUX1-213ENST00000549414 VCX3BQ9H321 246 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 HAUS2Q9NVX0 235 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 PCDHGC5Q9Y5F6 944 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 E2F8A0AVK6 867 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 SULT1E1P49888 294 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 CLEC16AQ2KHT3 1053 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 DCAF6Q58WW2 860 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 ATG16L1Q676U5 607 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 BTNL9Q6UXG8 535 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 LNX1Q8TBB1 728 aaPredicted RBP17.1■□□□□ 0.33
CUX1-213ENST00000549414 SKA2Q8WVK7 121 aaPredicted RBP17.1■□□□□ 0.33
CUX1-213ENST00000549414 PGBD4Q96DM1 585 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 SEC16BQ96JE7 1060 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 CYTH2Q99418 400 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 NCAPGQ9BPX3 1015 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 ZFP69BQ9UJL9 534 aa17.1■□□□□ 0.33
CUX1-213ENST00000549414 CASZ1Q86V15 1759 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 CFAP69A5D8W1 941 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 STAG3L1P0CL83 205 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 GBP7Q8N8V2 638 aaPredicted RBP17.09■□□□□ 0.33
CUX1-213ENST00000549414 PARK7Q99497 189 aaKnown RBP17.09■□□□□ 0.33
CUX1-213ENST00000549414 PARP4Q9UKK3 1724 aaKnown RBP17.09■□□□□ 0.33
CUX1-213ENST00000549414 TLR2O60603 784 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 SPATA21Q7Z572 469 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 MAP4K3Q8IVH8 894 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 EPS8L1Q8TE68 723 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 ZNF606Q8WXB4 792 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 TMEM121Q9BTD3 319 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 ZC3H7BQ9UGR2 993 aaKnown RBP17.09■□□□□ 0.33
CUX1-213ENST00000549414 PEX10O60683 326 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 DCTN3O75935 186 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 PROSCO94903 275 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 HSPA4LO95757 839 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 INSRRP14616 1297 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 TSPY1Q01534 308 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 NUDCD1Q96RS6 583 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 FHDC1Q9C0D6 1143 aaPredicted RBP17.09■□□□□ 0.33
CUX1-213ENST00000549414 BFARQ9NZS9 450 aa17.09■□□□□ 0.33
CUX1-213ENST00000549414 MYO9BQ13459 2157 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 CYP2C8P10632 490 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 GPD1P21695 349 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 PTENP60484 403 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 NIPA1Q7RTP0 329 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 NUDCD3Q8IVD9 361 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 MCOLN2Q8IZK6 566 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 THEM5Q8N1Q8 247 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 OPTNQ96CV9 577 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 CDC42EP4Q9H3Q1 356 aaKnown RBP17.08■□□□□ 0.33
CUX1-213ENST00000549414 ADARB2Q9NS39 739 aaKnown RBP17.08■□□□□ 0.33
CUX1-213ENST00000549414 DPP3Q9NY33 737 aa17.08■□□□□ 0.33
CUX1-213ENST00000549414 MARCOQ9UEW3 520 aaPredicted RBP17.08■□□□□ 0.33
CUX1-213ENST00000549414 IPO11Q9UI26 975 aaKnown RBP17.08■□□□□ 0.33
CUX1-213ENST00000549414 MARCKSL1P49006 195 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 ALDH5A1P51649 535 aaPredicted RBP17.08■□□□□ 0.32
CUX1-213ENST00000549414 USP33Q8TEY7 942 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 FSD1LQ9BXM9 530 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 NID2Q14112 1375 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 GYG2O15488 501 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 AMPD2Q01433 879 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 TSTA3Q13630 321 aaPredicted RBP17.08■□□□□ 0.32
CUX1-213ENST00000549414 IRF2BP2Q7Z5L9 587 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 BBS5Q8N3I7 341 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 KCNV2Q8TDN2 545 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 ECT2Q9H8V3 914 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 ATP8B3O60423 1300 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 RGPD5Q99666 1765 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 MYH2Q9UKX2 1941 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 H3BRJ5 948 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 RARAP10276 462 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 TYK2P29597 1187 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 ARFIP2P53365 341 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 RFX8Q6ZV50 586 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 WDR75Q8IWA0 830 aaKnown RBP17.08■□□□□ 0.32
CUX1-213ENST00000549414 ABRAQ8N0Z2 381 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms