RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 GTF2BQ00403 316 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 SMARCB1Q12824 385 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 TMEM132DQ14C87 1099 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 C8orf34Q49A92 452 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 ARHGAP29Q52LW3 1261 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 ARHGAP15Q53QZ3 475 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 DGKKQ5KSL6 1271 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 C9orf57Q5W0N0 161 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 LAIR1Q6GTX8 287 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 JADE1Q6IE81 842 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 GAREM2Q75VX8 874 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 DNAJB7Q7Z6W7 309 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-218ENST00000548945 RALGPS2Q86X27 583 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-218ENST00000548945 ARID3BQ8IVW6 561 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-218ENST00000548945 TMEM130Q8N3G9 435 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 ATAD1Q8NBU5 361 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 RSPRY1Q96DX4 576 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 TMX3Q96JJ7 454 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 MKNK1Q9BUB5 465 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 ST6GALNAC4Q9H4F1 302 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 BLOC1S4Q9NUP1 217 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 ZMYM5Q9UJ78 669 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 C2CD2Q9Y426 696 aa13.93□□□□□ -0.18
PTCH1-218ENST00000548945 KMT2BQ9UMN6 2715 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-218ENST00000548945 PPEF2O14830 753 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 CNR2P34972 360 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 LONP1P36776 959 aaKnown RBP13.92□□□□□ -0.18
PTCH1-218ENST00000548945 KPNA1P52294 538 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-218ENST00000548945 PLCB2Q00722 1185 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 SLFN12LQ6IEE8 588 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 SLC39A4Q6P5W5 647 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 SYNPOQ8N3V7 929 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 C2orf15Q8WU43 125 aaKnown RBP13.92□□□□□ -0.18
PTCH1-218ENST00000548945 RAD54LQ92698 747 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 FIZ1Q96SL8 496 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 CCSER1Q9C0I3 900 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 ATXN3LQ9H3M9 355 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 CDV3Q9UKY7 258 aaKnown RBP13.92□□□□□ -0.18
PTCH1-218ENST00000548945 SLC27A5Q9Y2P5 690 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 STYXL1Q9Y6J8 313 aa13.92□□□□□ -0.18
PTCH1-218ENST00000548945 OBSL1O75147 1896 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 SPECC1L-ADORA2AF8WAN1 911 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 DPYSL4O14531 572 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 TBCAO75347 108 aaKnown RBP13.91□□□□□ -0.18
PTCH1-218ENST00000548945 KRT18P05783 430 aaKnown RBP13.91□□□□□ -0.18
PTCH1-218ENST00000548945 RETP07949 1114 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 NFICP08651 508 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 PLCG1P19174 1290 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 GABRR2P28476 465 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 CDC25CP30307 473 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 HOXA6P31267 233 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 CTHP32929 405 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 MCM2P49736 904 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 GAS6Q14393 721 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 VEPH1Q14D04 833 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 STXBP5Q5T5C0 1151 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 GPR158Q5T848 1215 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 BRAPQ7Z569 592 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 TTC9BQ8N6N2 239 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 OR10T2Q8NGX3 314 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 LRRC15Q8TF66 581 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 FAM212AQ96EL1 285 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 RTKNQ9BST9 563 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 ZCWPW1Q9H0M4 648 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 TASP1Q9H6P5 420 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 USP18Q9UMW8 372 aa13.91□□□□□ -0.18
PTCH1-218ENST00000548945 LAMA1P25391 3075 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 SLC38A8A6NNN8 435 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 TAF6P49848 677 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 ATXN1P54253 815 aaKnown RBP13.9□□□□□ -0.18
PTCH1-218ENST00000548945 SATB1Q01826 763 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 DHX8Q14562 1220 aaKnown RBP13.9□□□□□ -0.18
PTCH1-218ENST00000548945 MCM6Q14566 821 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 SLC39A12Q504Y0 691 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 METTL23Q86XA0 190 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 NT5DC4Q86YG4 428 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 THEM5Q8N1Q8 247 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 FAM200AQ8TCP9 573 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 SPPL2BQ8TCT7 592 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 LARP4BQ92615 738 aaKnown RBP13.9□□□□□ -0.18
PTCH1-218ENST00000548945 HVCN1Q96D96 273 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 LRRC3BQ96PB8 259 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 GCNAQ96QF7 691 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 TMEM209Q96SK2 561 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 PARD6AQ9NPB6 346 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 THG1LQ9NWX6 298 aaKnown RBP13.9□□□□□ -0.18
PTCH1-218ENST00000548945 MAP1BP46821 2468 aaKnown RBP13.9□□□□□ -0.18
PTCH1-218ENST00000548945 GREB1Q4ZG55 1949 aa13.9□□□□□ -0.18
PTCH1-218ENST00000548945 ATG2BQ96BY7 2078 aa13.89□□□□□ -0.19
PTCH1-218ENST00000548945 SOBPA7XYQ1 873 aa13.89□□□□□ -0.19
PTCH1-218ENST00000548945 K7ESF4 209 aa13.89□□□□□ -0.19
PTCH1-218ENST00000548945 CYB561D2O14569 222 aa13.89□□□□□ -0.19
PTCH1-218ENST00000548945 FOXD2O60548 495 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-218ENST00000548945 IL18RAPO95256 599 aa13.89□□□□□ -0.19
PTCH1-218ENST00000548945 ATF6P18850 670 aa13.89□□□□□ -0.19
PTCH1-218ENST00000548945 NMT1P30419 496 aaKnown RBP13.89□□□□□ -0.19
PTCH1-218ENST00000548945 DDIT3P35638 169 aa13.89□□□□□ -0.19
PTCH1-218ENST00000548945 ACOT2P49753 483 aa13.89□□□□□ -0.19
PTCH1-218ENST00000548945 CCINQ13939 588 aa13.89□□□□□ -0.19
PTCH1-218ENST00000548945 KARSQ15046 597 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms