RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 KCNJ5P48544 419 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 NOMO3P69849 1222 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 VPS72Q15906 364 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 CNGA2Q16280 664 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 PABPC1LQ4VXU2 614 aaKnown RBP5.07□□□□□ -1.6
VPS29-205ENST00000548539 PAPD7Q5XG87 772 aaKnown RBP5.07□□□□□ -1.6
VPS29-205ENST00000548539 OTUD7BQ6GQQ9 843 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 C1orf228Q6PIY5 440 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 TOGARAM2Q6ZUX3 1019 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 RNF169Q8NCN4 708 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 ACRBPQ8NEB7 543 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 PGBD4Q96DM1 585 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 MNTQ99583 582 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 PACSIN1Q9BY11 444 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 SYNPO2LQ9H987 977 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 PLCB1Q9NQ66 1216 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 PIH1D1Q9NWS0 290 aaKnown RBP5.07□□□□□ -1.6
VPS29-205ENST00000548539 SLC45A2Q9UMX9 530 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 PNPLA7Q6ZV29 1317 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 KLRG2A4D1S0 409 aaPredicted RBP5.06□□□□□ -1.6
VPS29-205ENST00000548539 RASA4BC9J798 803 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 MYO1FO00160 1098 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 RASA4O43374 803 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 FRS3O43559 492 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 NCK2O43639 380 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 MATN4O95460 622 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 GNAI3P08754 354 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 MTHFD1P11586 935 aaKnown RBP5.06□□□□□ -1.6
VPS29-205ENST00000548539 RABGGTBP53611 331 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 PSMC1P62191 440 aaKnown RBP5.06□□□□□ -1.6
VPS29-205ENST00000548539 GNAI1P63096 354 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 FMO1Q01740 532 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 C3orf38Q5JPI3 329 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 DACT2Q5SW24 774 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 SEM1Q6ZVN7 128 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 SESTD1Q86VW0 696 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 SMC5Q8IY18 1101 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 ATXN2LQ8WWM7 1075 aaKnown RBP5.06□□□□□ -1.6
VPS29-205ENST00000548539 SGCZQ96LD1 299 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 ZNF512Q96ME7 567 aaPredicted RBP5.06□□□□□ -1.6
VPS29-205ENST00000548539 NDC1Q9BTX1 674 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 BTBD1Q9H0C5 482 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 BRD9Q9H8M2 597 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 CYP4F11Q9HBI6 524 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 PTPRHQ9HD43 1115 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 SACM1LQ9NTJ5 587 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 GNL3LQ9NVN8 582 aaKnown RBP5.06□□□□□ -1.6
VPS29-205ENST00000548539 FBXO34Q9NWN3 711 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 STK32BQ9NY57 414 aa5.06□□□□□ -1.6
VPS29-205ENST00000548539 POM121BA6NF01 834 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 F8W8V4 182 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 MFAP3LO75121 409 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 EIF3JO75822 258 aaKnown RBP5.05□□□□□ -1.6
VPS29-205ENST00000548539 GJB1P08034 283 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 SNRPA1P09661 255 aaKnown RBP5.05□□□□□ -1.6
VPS29-205ENST00000548539 TNFSF4P23510 183 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 CASP5P51878 434 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 CLRN1P58418 232 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 ZNF543Q08ER8 600 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 CHAF1AQ13111 956 aaPredicted RBP5.05□□□□□ -1.6
VPS29-205ENST00000548539 STK3Q13188 491 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 ZNF362Q5T0B9 420 aaPredicted RBP5.05□□□□□ -1.6
VPS29-205ENST00000548539 FKBP15Q5T1M5 1219 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 LRRC55Q6ZSA7 311 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 ELOA2Q8IYF1 753 aaPredicted RBP5.05□□□□□ -1.6
VPS29-205ENST00000548539 CCDC33Q8N5R6 958 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 OR2C3Q8N628 320 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 IL17RDQ8NFM7 739 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 PHACTR3Q96KR7 559 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 CPPED1Q9BRF8 314 aaPredicted RBP5.05□□□□□ -1.6
VPS29-205ENST00000548539 LSM14BQ9BX40 385 aaKnown RBP5.05□□□□□ -1.6
VPS29-205ENST00000548539 GSTO2Q9H4Y5 243 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 SPON1Q9HCB6 807 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.05□□□□□ -1.6
VPS29-205ENST00000548539 SIDT1Q9NXL6 827 aaKnown RBP5.05□□□□□ -1.6
VPS29-205ENST00000548539 HDAC5Q9UQL6 1122 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 COX11Q9Y6N1 276 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 COL4A3Q01955 1670 aa5.05□□□□□ -1.6
VPS29-205ENST00000548539 CDHR4A6H8M9 788 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 PRSS29PA6NIE9 313 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 TBKBP1A7MCY6 615 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 ZNF785A8K8V0 405 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 B5MCH6 92 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 F5H423 210 aaPredicted RBP5.04□□□□□ -1.6
VPS29-205ENST00000548539 SETSIPP0DME0 302 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 EN2P19622 333 aaPredicted RBP5.04□□□□□ -1.6
VPS29-205ENST00000548539 NR4A1P22736 598 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 SLC6A2P23975 617 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 STT3AP46977 705 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 TRAPPC10P48553 1259 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 TAP1Q03518 808 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 BMT2Q1RMZ1 405 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 GRAMD1BQ3KR37 738 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 LONRF3Q496Y0 759 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 FAM209BQ5JX69 171 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 ATXN7L2Q5T6C5 722 aaPredicted RBP5.04□□□□□ -1.6
VPS29-205ENST00000548539 UTP14CQ5TAP6 766 aaKnown RBP5.04□□□□□ -1.6
VPS29-205ENST00000548539 KLHDC7AQ5VTJ3 777 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 MFSD5Q6N075 450 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 HTR3DQ70Z44 454 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms