RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 FOXN3O00409 490 aaPredicted RBP17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 OAZ2O95190 189 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 FGFR3P22607 806 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 PDE6CP51160 858 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 SHHQ15465 462 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 MAPRE1Q15691 268 aaKnown RBP17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 C9orf50Q5SZB4 431 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 GJB7Q6PEY0 223 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 TMEM270Q6UE05 265 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 CYP26C1Q6V0L0 522 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 CCDC186Q7Z3E2 898 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 THEM5Q8N1Q8 247 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 PDCL2Q8N4E4 241 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 CPLX3Q8WVH0 158 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 KBTBD7Q8WVZ9 684 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 ACBD6Q9BR61 282 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 SNX25Q9H3E2 840 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 SMYD3Q9H7B4 428 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 STXBP5LQ9Y2K9 1186 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 PCDHB4Q9Y5E5 795 aa17.09■□□□□ 0.33
PRPF40A-212ENST00000545856 C5orf67F2Z3F1 127 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 H7C4K7 107 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 MED7O43513 233 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 SOD2P04179 222 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 GNL1P36915 607 aaPredicted RBP17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 APBA1Q02410 837 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 KRT17Q04695 432 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 YWHAHQ04917 246 aaPredicted RBP17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 SMARCB1Q12824 385 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 MAPK8IP2Q13387 824 aaPredicted RBP17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 BMS1Q14692 1282 aaKnown RBP17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 PTPN21Q16825 1174 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 USP41Q3LFD5 358 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 FAM117BQ6P1L5 589 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 SCARA5Q6ZMJ2 495 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 ANKS3Q6ZW76 656 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 IRF2BP2Q7Z5L9 587 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 DDX53Q86TM3 631 aaKnown RBP17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 CCDC170Q8IYT3 715 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 TDHQ8IZJ6 230 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 CRYBG2Q8N1P7 616 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 RBBP8NLQ8NC74 664 aaPredicted RBP17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 KAT5Q92993 513 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 ARID3AQ99856 593 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 HERC2P3Q9BVR0 1158 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 CDH9Q9ULB4 789 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 POLIQ9UNA4 740 aa17.08■□□□□ 0.32
PRPF40A-212ENST00000545856 OR6C75A6NL08 312 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 WEE2P0C1S8 567 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 KRT5P13647 590 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 ADKP55263 362 aaKnown RBP17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 KLHL30Q0D2K2 578 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 OVOS1Q6IE37 1185 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 ZNF280DQ6N043 979 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 TRIM72Q6ZMU5 477 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 LRRC8AQ8IWT6 810 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 TMEM176AQ96HP8 235 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 TTPALQ9BTX7 342 aa17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 PUF60Q9UHX1 559 aaKnown RBP17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 AJAP1Q9UKB5 411 aaPredicted RBP17.07■□□□□ 0.32
PRPF40A-212ENST00000545856 A8MXQ7 604 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 RNF225M0QZC1 329 aaPredicted RBP17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 ARHGAP6O43182 974 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 C1RP00736 705 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 LINC00271P0C7V0 271 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 VDRP11473 427 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 CD58P19256 250 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 GNA15P30679 374 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 NDST1P52848 882 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 TSPY1Q01534 308 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 MLLT1Q03111 559 aaPredicted RBP17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 MRPL58Q14197 206 aaKnown RBP17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 OR6B3Q8NGW1 331 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 EPS8L1Q8TE68 723 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 PIK3R5Q8WYR1 880 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 BAG1Q99933 345 aaPredicted RBP17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 C11orf84Q9BUA3 381 aaPredicted RBP17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 SDCBP2Q9H190 292 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 CHST7Q9NS84 486 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 MSRAQ9UJ68 235 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 BACE2Q9Y5Z0 518 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 PTPRDP23468 1912 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 ATP8B3O60423 1300 aa17.06■□□□□ 0.32
PRPF40A-212ENST00000545856 LINC01553A4QN01 128 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 ITGB1P05556 798 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 CYP11B1P15538 503 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 CLCN1P35523 988 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 CYLC1P35663 651 aaPredicted RBP17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 BMPR1AP36894 532 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 USP8P40818 1118 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 BRCC3P46736 316 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 RAD23BP54727 409 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 FAM171A1Q5VUB5 890 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 WSCD1Q658N2 575 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 HGSNATQ68CP4 663 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 ARHGAP17Q68EM7 881 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 SCARA3Q6AZY7 606 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 WDR59Q6PJI9 974 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 TMCO2Q7Z6W1 182 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms