RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 THEM5Q8N1Q8 247 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 PPM1KQ8N3J5 372 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 AUTS2Q8WXX7 1259 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 FAM81BQ96LP2 452 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 GUCD1Q96NT3 240 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 FAM124BQ9H5Z6 455 aaPredicted RBP18.33■□□□□ 0.52
LIG1-204ENST00000542460 SMYD3Q9H7B4 428 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 IFNKQ9P0W0 207 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 APEX2Q9UBZ4 518 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 BACE2Q9Y5Z0 518 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 GABRDO14764 452 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 CSPG5O95196 566 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 TPM3P06753 285 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 WEE2P0C1S8 567 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 WARSP23381 471 aaKnown RBP18.32■□□□□ 0.52
LIG1-204ENST00000542460 CA8P35219 290 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 CDH8P55286 799 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 GCNT1Q02742 428 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 SYCP1Q15431 976 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 UVSSAQ2YD98 709 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 CTXN3Q4LDR2 81 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 PLPP4Q5VZY2 271 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 KBTBD7Q8WVZ9 684 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 MRPL45Q9BRJ2 306 aaKnown RBP18.32■□□□□ 0.52
LIG1-204ENST00000542460 SNX25Q9H3E2 840 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 RXFP1Q9HBX9 757 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 PLCB1Q9NQ66 1216 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 FNIP2Q9P278 1114 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 MTRRQ9UBK8 725 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 SIK3Q9Y2K2 1263 aa18.32■□□□□ 0.52
LIG1-204ENST00000542460 EYSQ5T1H1 3165 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.31■□□□□ 0.52
LIG1-204ENST00000542460 C2orf71A6NGG8 1288 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 CBFA2T2O43439 604 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 GNL1P36915 607 aaPredicted RBP18.31■□□□□ 0.52
LIG1-204ENST00000542460 RRAGAQ7L523 313 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 ARHGEF19Q8IW93 802 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 TTC39CQ8N584 583 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 OR6B3Q8NGW1 331 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 PCMTD1Q96MG8 357 aaPredicted RBP18.31■□□□□ 0.52
LIG1-204ENST00000542460 LSM14BQ9BX40 385 aaKnown RBP18.31■□□□□ 0.52
LIG1-204ENST00000542460 SDCBP2Q9H190 292 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 SIX2Q9NPC8 291 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 UBE2TQ9NPD8 197 aaPredicted RBP18.31■□□□□ 0.52
LIG1-204ENST00000542460 DDX43Q9NXZ2 648 aaKnown RBP18.31■□□□□ 0.52
LIG1-204ENST00000542460 PLXNA4Q9HCM2 1894 aa18.31■□□□□ 0.52
LIG1-204ENST00000542460 A0A1W2PQC6 194 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 HIDE1A8MVS5 230 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 TBC1D4O60343 1298 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 POU3F3P20264 500 aaPredicted RBP18.3■□□□□ 0.52
LIG1-204ENST00000542460 RAP1GAPP47736 663 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 MFAP3P55082 362 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 YWHAEP62258 255 aaKnown RBP18.3■□□□□ 0.52
LIG1-204ENST00000542460 PLCB2Q00722 1185 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 APBA1Q02410 837 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 KLHDC7AQ5VTJ3 777 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 DPY19L2P1Q6NXN4 242 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 SARM1Q6SZW1 724 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 ENOSF1Q7L5Y1 443 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 JAKMIP2Q96AA8 810 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 GAS2L1Q99501 681 aaPredicted RBP18.3■□□□□ 0.52
LIG1-204ENST00000542460 ARID3AQ99856 593 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 ACBD6Q9BR61 282 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 EMILIN2Q9BXX0 1053 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 XPO4Q9C0E2 1151 aaKnown RBP18.3■□□□□ 0.52
LIG1-204ENST00000542460 FBXL5Q9UKA1 691 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 PCDHGC5Q9Y5F6 944 aa18.3■□□□□ 0.52
LIG1-204ENST00000542460 OR6C75A6NL08 312 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 CNPP09543 421 aaKnown RBP18.29■□□□□ 0.52
LIG1-204ENST00000542460 RFX1P22670 979 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 PCSK1P29120 753 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 INCA1Q0VD86 236 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 SLC8B1Q6J4K2 584 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 UNC93AQ86WB7 457 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 OSTM1Q86WC4 334 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 PPP2R3CQ969Q6 453 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 RTP3Q9BQQ7 232 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 CLSTN3Q9BQT9 956 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 CISHQ9NSE2 258 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 FAM207AQ9NSI2 230 aaPredicted RBP18.29■□□□□ 0.52
LIG1-204ENST00000542460 BARX2Q9UMQ3 279 aaPredicted RBP18.29■□□□□ 0.52
LIG1-204ENST00000542460 CDY1Q9Y6F8 540 aa18.29■□□□□ 0.52
LIG1-204ENST00000542460 A8MXQ7 604 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 TEX28O15482 410 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 RPL17P18621 184 aaKnown RBP18.28■□□□□ 0.52
LIG1-204ENST00000542460 CD58P19256 250 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 LMO2P25791 158 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 NDUFV1P49821 464 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 KLK7P49862 253 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 GJB7Q6PEY0 223 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 RSPO2Q6UXX9 243 aaPredicted RBP18.28■□□□□ 0.52
LIG1-204ENST00000542460 NEK11Q8NG66 645 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 KAT5Q92993 513 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 KREMEN1Q96MU8 473 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 KLHL5Q96PQ7 755 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 DNAJC12Q9UKB3 198 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 DAAM1Q9Y4D1 1078 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 CILPO75339 1184 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 ADH1AP07327 375 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 PDGFRBP09619 1106 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms