RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 SESN3P58005 492 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 ABHD15Q6UXT9 468 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 AGBL3Q8NEM8 1001 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 TRAIPQ9BWF2 469 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 APOL6Q9BWW8 343 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 NSRP1Q9H0G5 558 aaKnown RBP14.31□□□□□ -0.12
PTPN1-202ENST00000541713 HMGXB4Q9UGU5 601 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 LY75O60449 1722 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 COL11A2P13942 1736 aaPredicted RBP14.31□□□□□ -0.12
PTPN1-202ENST00000541713 GBP2P32456 591 aaPredicted RBP14.31□□□□□ -0.12
PTPN1-202ENST00000541713 ZNF699Q32M78 642 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 ANKRD22Q5VYY1 191 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 RFX6Q8HWS3 928 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 SULF1Q8IWU6 871 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 FBXO16Q8IX29 292 aaPredicted RBP14.31□□□□□ -0.12
PTPN1-202ENST00000541713 CPB2Q96IY4 423 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 LPIN3Q9BQK8 851 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 CCDC77Q9BR77 488 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 ASCC2Q9H1I8 757 aaPredicted RBP14.31□□□□□ -0.12
PTPN1-202ENST00000541713 IVDP26440 423 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 PSMC1P62191 440 aaKnown RBP14.31□□□□□ -0.12
PTPN1-202ENST00000541713 ZNF568Q3ZCX4 644 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 SENP7Q9BQF6 1050 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 CHMP2BQ9UQN3 213 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 LAMA3Q16787 3333 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 UBA1P22314 1058 aaKnown RBP14.3□□□□□ -0.12
PTPN1-202ENST00000541713 RPA3P35244 121 aaPredicted RBP14.3□□□□□ -0.12
PTPN1-202ENST00000541713 TFDP1Q14186 410 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 MON1BQ7L1V2 547 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 SPATA21Q7Z572 469 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 FAM228AQ86W67 206 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 FITM2Q8N6M3 262 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 ACTL9Q8TC94 416 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 TMC2Q8TDI7 906 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 ZNF408Q9H9D4 720 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.3□□□□□ -0.122e-10■■■□□ 18.9
PTPN1-202ENST00000541713 USP15Q9Y4E8 981 aaPredicted RBP14.3□□□□□ -0.12
PTPN1-202ENST00000541713 TCRBV7S3A2A0A539 114 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 SNX3O60493 162 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 NAA25Q14CX7 972 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 MDH1BQ5I0G3 518 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 HHATQ5VTY9 493 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 SCYL3Q8IZE3 742 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 RSAD2Q8WXG1 361 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 SGSM3Q96HU1 749 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 STMN4Q9H169 189 aaPredicted RBP14.3□□□□□ -0.12
PTPN1-202ENST00000541713 ELP3Q9H9T3 547 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 ETNK1Q9HBU6 452 aa14.3□□□□□ -0.12
PTPN1-202ENST00000541713 MRPL47Q9HD33 250 aaKnown RBP14.3□□□□□ -0.12
PTPN1-202ENST00000541713 NFKBIEO00221 500 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 STAM2O75886 525 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 SUN1O94901 812 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 F7P08709 466 aaPredicted RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 ACO1P21399 889 aaKnown RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 OTUD4Q01804 1114 aaKnown RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 GCNT1Q02742 428 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 PPP6R3Q5H9R7 873 aaPredicted RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 C7orf31Q8N865 590 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 N4BP2L2Q92802 583 aaPredicted RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 TRABDQ9H4I3 376 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 METTL5Q9NRN9 209 aaKnown RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 ARHGAP28Q9P2N2 729 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 HAO1Q9UJM8 370 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 TBC1D12O60347 775 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 STBD1O95210 358 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 CPP00450 1065 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 MYBL1P10243 752 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 MUTP22033 750 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 ELF3P78545 371 aaPredicted RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 MYBPC2Q14324 1141 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 TRIM68Q6AZZ1 485 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 SPATS2Q86XZ4 545 aaKnown RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 C12orf56Q8IXR9 622 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 SAMD3Q8N6K7 520 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 KCTD6Q8NC69 237 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 GRK7Q8WTQ7 553 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 ERP27Q96DN0 273 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 PLCD4Q9BRC7 762 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 MAGEB5Q9BZ81 275 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 MIS12Q9H081 205 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 NOD2Q9HC29 1040 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 NPHS2Q9NP85 383 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 PDGFCQ9NRA1 345 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 PARVAQ9NVD7 372 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 COQ4Q9Y3A0 265 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 THSD7AQ9UPZ6 1657 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 A0A0G2JND7 137 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 SPDYE16A6NNV3 312 aaPredicted RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 KRT4P19013 534 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 PHKA2P46019 1235 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 YWHAGP61981 247 aaKnown RBP eCLIP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 C15orf59Q2T9L4 293 aaPredicted RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 SESTD1Q86VW0 696 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 CFAP36Q96G28 342 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 HEXIM2Q96MH2 286 aaKnown RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 FAM167BQ9BTA0 163 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 NGRNQ9NPE2 291 aaKnown RBP14.29□□□□□ -0.12
PTPN1-202ENST00000541713 FAM49BQ9NUQ9 324 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 KLHL14Q9P2G3 628 aa14.29□□□□□ -0.12
PTPN1-202ENST00000541713 CCDC195A0A1B0GUA6 201 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms