RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 FSCN1Q16658 493 aaKnown RBP15.42■□□□□ 0.06
CLIP1-216ENST00000541410 PLEKHA7Q6IQ23 1121 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 CCDC50Q8IVM0 306 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 C1orf54Q8WWF1 131 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 RUBCNQ92622 972 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 ACSF2Q96CM8 615 aaPredicted RBP15.42■□□□□ 0.06
CLIP1-216ENST00000541410 NAP1L3Q99457 506 aaPredicted RBP15.42■□□□□ 0.06
CLIP1-216ENST00000541410 TRIM6Q9C030 488 aaPredicted RBP15.42■□□□□ 0.06
CLIP1-216ENST00000541410 SLITRK6Q9H5Y7 841 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 MBLAC1A4D2B0 266 aaPredicted RBP15.41■□□□□ 0.06
CLIP1-216ENST00000541410 PROSCO94903 275 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 DARSP14868 501 aaKnown RBP15.41■□□□□ 0.06
CLIP1-216ENST00000541410 CPT1AP50416 773 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 OGDHQ02218 1023 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 ZFYVE27Q5T4F4 411 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 MAATS1Q7Z4T9 603 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 ERICH1Q86X53 443 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 SLC4A11Q8NBS3 891 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 TMEM35BQ8NCS4 154 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 FEZF2Q8TBJ5 459 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 ATG4AQ8WYN0 398 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 VIPAS39Q9H9C1 493 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 F8VP50 259 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 EIF4BP23588 611 aaKnown RBP15.41■□□□□ 0.06
CLIP1-216ENST00000541410 C1QBPQ07021 282 aaKnown RBP15.41■□□□□ 0.06
CLIP1-216ENST00000541410 ZNF252P-AS1Q0IIN9 211 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 PTPN20Q4JDL3 420 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 ANKS1BQ7Z6G8 1248 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 C12orf29Q8N999 325 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 UBA3Q8TBC4 463 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 HEXIM2Q96MH2 286 aaKnown RBP15.41■□□□□ 0.06
CLIP1-216ENST00000541410 RNF39Q9H2S5 420 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 MRPL47Q9HD33 250 aaKnown RBP15.41■□□□□ 0.06
CLIP1-216ENST00000541410 PARVAQ9NVD7 372 aa15.41■□□□□ 0.06
CLIP1-216ENST00000541410 UTP11Q9Y3A2 253 aaKnown RBP15.41■□□□□ 0.06
CLIP1-216ENST00000541410 SMIM35A0A1B0GVV1 85 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 PI4K2BG5E9Z4 385 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 GRM5P41594 1212 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 ADAM17P78536 824 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 CAP1Q01518 475 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 SNX17Q15036 470 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 GNASQ5JWF2 1037 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 DNAJC24Q6P3W2 148 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 SLC27A1Q6PCB7 646 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 DCUN1D2Q6PH85 259 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 CCDC137Q6PK04 289 aaKnown RBP15.4■□□□□ 0.06
CLIP1-216ENST00000541410 CXCL17Q6UXB2 119 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 SESTD1Q86VW0 696 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 CAVIN3Q969G5 261 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 DDX27Q96GQ7 796 aaKnown RBP15.4■□□□□ 0.06
CLIP1-216ENST00000541410 ACBD3Q9H3P7 528 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 SNX24Q9Y343 169 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 HCRTO43612 131 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 RNF40O75150 1001 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 PHF2O75151 1096 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 CILPO75339 1184 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 RECQL4O94761 1208 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 PSMC4P43686 418 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 NDST1P52848 882 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 PURAQ00577 322 aaKnown RBP15.4■□□□□ 0.06
CLIP1-216ENST00000541410 PTPN11Q06124 597 aaPredicted RBP15.4■□□□□ 0.06
CLIP1-216ENST00000541410 SIX1Q15475 284 aaPredicted RBP15.4■□□□□ 0.06
CLIP1-216ENST00000541410 TXNRD3NBQ6F5E7 133 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 CYP4F22Q6NT55 531 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 JAMLQ86YT9 394 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 C7orf31Q8N865 590 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 TRIB2Q92519 343 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 RNF25Q96BH1 459 aaPredicted RBP15.4■□□□□ 0.06
CLIP1-216ENST00000541410 VCPIP1Q96JH7 1222 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 ZIM3Q96PE6 472 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 CPXM1Q96SM3 734 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 LPIN3Q9BQK8 851 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 SNX9Q9Y5X1 595 aa15.4■□□□□ 0.06
CLIP1-216ENST00000541410 HAS3O00219 553 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 KRT14P02533 472 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 RBP5P82980 135 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 GABPB1Q06547 395 aaPredicted RBP15.39■□□□□ 0.05
CLIP1-216ENST00000541410 NOTUMQ6P988 496 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 CCDC105Q8IYK2 499 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 TMEM176AQ96HP8 235 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 GOLGA2P5Q9HBQ8 144 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 CHST7Q9NS84 486 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 CEP83Q9Y592 693 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 SCINQ9Y6U3 715 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 C17orf102A2RUQ5 167 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 M0QYV0 167 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 RALAP11233 206 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 IBSPP21815 317 aaPredicted RBP15.39■□□□□ 0.05
CLIP1-216ENST00000541410 YWHAEP62258 255 aaKnown RBP15.39■□□□□ 0.05
CLIP1-216ENST00000541410 EMC1Q8N766 993 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.39■□□□□ 0.05
CLIP1-216ENST00000541410 SOCS4Q8WXH5 440 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 PARP2Q9UGN5 583 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 ADAM21Q9UKJ8 722 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 PCDHGC3Q9UN70 934 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 C2CD2Q9Y426 696 aa15.39■□□□□ 0.05
CLIP1-216ENST00000541410 PASKQ96RG2 1323 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 TMEM191CA6NGB0 347 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 MICAL2O94851 1124 aa15.38■□□□□ 0.05
CLIP1-216ENST00000541410 LSM8O95777 96 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms