RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 TEX33O43247 280 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 KIF5CO60282 957 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 ABCB7O75027 752 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 HIP1RO75146 1068 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 ATG7O95352 703 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 AFPP02771 609 aaKnown RBP9.04□□□□□ -0.96
CHD4-208ENST00000540960 TNNT1P13805 278 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 HNRNPH3P31942 346 aaKnown RBP9.04□□□□□ -0.96
CHD4-208ENST00000540960 CASP14P31944 242 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 PMS1P54277 932 aaKnown RBP9.04□□□□□ -0.96
CHD4-208ENST00000540960 SATB1Q01826 763 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 SYCP1Q15431 976 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 SPA17Q15506 151 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 HSP90AA4PQ58FG1 418 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 CEP135Q66GS9 1140 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 HEATR6Q6AI08 1181 aaKnown RBP9.04□□□□□ -0.96
CHD4-208ENST00000540960 ABHD15Q6UXT9 468 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 C15orf39Q6ZRI6 1047 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 INTS8Q75QN2 995 aaKnown RBP9.04□□□□□ -0.96
CHD4-208ENST00000540960 CACNA2D4Q7Z3S7 1137 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 VPS36Q86VN1 386 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 TRIM59Q8IWR1 403 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 UBE2Q2Q8WVN8 375 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 TCP11Q8WWU5 503 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 SLC7A3Q8WY07 619 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 SLC39A7Q92504 469 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 CEP170P1Q96L14 293 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 NIFKQ9BYG3 293 aaKnown RBP9.04□□□□□ -0.96
CHD4-208ENST00000540960 TSGA10Q9BZW7 698 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 MLXIPQ9HAP2 919 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 ATP6V0A4Q9HBG4 840 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 ZNF302Q9NR11 478 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 ABHD10Q9NUJ1 306 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 GABBR1Q9UBS5 961 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 FBXL5Q9UKA1 691 aa9.04□□□□□ -0.96
CHD4-208ENST00000540960 CACNA1EQ15878 2313 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 CCDC195A0A1B0GUA6 201 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 C9IYK1 514 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 NOP56O00567 594 aaKnown RBP9.03□□□□□ -0.96
CHD4-208ENST00000540960 GYPCP04921 128 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 CLCN4P51793 760 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 EFNA5P52803 228 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 GTF2BQ00403 316 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 SCAPQ12770 1279 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 NFX1Q12986 1120 aaKnown RBP9.03□□□□□ -0.96
CHD4-208ENST00000540960 PAK2Q13177 524 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 PLA2G2CQ5R387 149 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 C10orf76Q5T2E6 689 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 UTP14CQ5TAP6 766 aaKnown RBP9.03□□□□□ -0.96
CHD4-208ENST00000540960 SLFN12LQ6IEE8 588 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 TAF2Q6P1X5 1199 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 GBP6Q6ZN66 633 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 ZNF662Q6ZS27 426 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 TPRG1Q6ZUI0 275 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 PLPPR4Q7Z2D5 763 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 NELFCDQ8IXH7 590 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 ZNF687Q8N1G0 1237 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 ZNF843Q8N446 348 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 ADAM2Q99965 735 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 FAM49AQ9H0Q0 323 aaPredicted RBP9.03□□□□□ -0.96
CHD4-208ENST00000540960 MMRN2Q9H8L6 949 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 PLCB1Q9NQ66 1216 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 PKD2L1Q9P0L9 805 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 CEP72Q9P209 647 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 PPP2R2CQ9Y2T4 447 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 MAFBQ9Y5Q3 323 aaPredicted RBP9.03□□□□□ -0.96
CHD4-208ENST00000540960 MYO9AB2RTY4 2548 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 IGSF9BQ9UPX0 1349 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 DOPEY1Q5JWR5 2465 aa9.03□□□□□ -0.96
CHD4-208ENST00000540960 ASCC3Q8N3C0 2202 aaKnown RBP9.03□□□□□ -0.96
CHD4-208ENST00000540960 URB1O60287 2271 aaKnown RBP9.02□□□□□ -0.96
CHD4-208ENST00000540960 PLXNB3Q9ULL4 1909 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 NPHP3-ACAD11A0A0J9YXS1 232 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 K7ENM7 598 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 PMM2O15305 246 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 EXOC3O60645 756 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 USO1O60763 962 aaKnown RBP9.02□□□□□ -0.97
CHD4-208ENST00000540960 ATP9AO75110 1047 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 RFPL2O75678 378 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 GFPT2O94808 682 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 PRPF6O94906 941 aaKnown RBP9.02□□□□□ -0.97
CHD4-208ENST00000540960 CCNE2O96020 404 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 OATP04181 439 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 CEACAM1P13688 526 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 GTF2H1P32780 548 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 PPM1AP35813 382 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 POLGP54098 1239 aaPredicted RBP9.02□□□□□ -0.97
CHD4-208ENST00000540960 ADKP55263 362 aaKnown RBP9.02□□□□□ -0.97
CHD4-208ENST00000540960 ETF1P62495 437 aaKnown RBP9.02□□□□□ -0.97
CHD4-208ENST00000540960 RAD51AP2Q09MP3 1159 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 STRN3Q13033 797 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 MEA1Q16626 185 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 ARHGAP29Q52LW3 1261 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 SWSAP1Q6NVH7 229 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 NYAP1Q6ZVC0 841 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 GET4Q7L5D6 327 aaPredicted RBP9.02□□□□□ -0.97
CHD4-208ENST00000540960 HAUS6Q7Z4H7 955 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 RSPH3Q86UC2 560 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 FAM186BQ8IYM0 893 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 ZNF710Q8N1W2 664 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms