RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 OVOS1Q6IE37 1185 aa12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 TCEAL6Q6IPX3 200 aa12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 ARMCX5Q6P1M9 558 aa12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 DSTYKQ6XUX3 929 aa12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 DAW1Q8N136 415 aa12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 TCEAL3Q969E4 200 aa12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 NTPCRQ9BSD7 190 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 EDEM2Q9BV94 578 aa12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 SLC46A2Q9BY10 475 aa12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 C17orf75Q9HAS0 396 aa12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 DDX19AQ9NUU7 478 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 NUP210Q8TEM1 1887 aaPredicted RBP12.65□□□□□ -0.38
CLSTN3-209ENST00000539982 KIF26AQ9ULI4 1882 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 BCLAF3A2AJT9 711 aaKnown RBP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 TMEM8BA6NDV4 472 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 RNF40O75150 1001 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 SOAT2O75908 522 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 CAVIN2O95810 425 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 TYMPP19971 482 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 CYP3A5P20815 502 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 CDC25CP30307 473 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 TUFMP49411 452 aaKnown RBP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 FXR2P51116 673 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 FOSBP53539 338 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 CYP4F8P98187 520 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 CREB5Q02930 508 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 SPAG1Q07617 926 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 STRN3Q13033 797 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 PDIA5Q14554 519 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 NOLC1Q14978 699 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 ACAP1Q15027 740 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 TMEM130Q8N3G9 435 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 TTC9BQ8N6N2 239 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 NSUN7Q8NE18 718 aaKnown RBP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 GTF3C6Q969F1 213 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 DRC1Q96MC2 740 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 TMEM121BQ9BXQ6 578 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 SMG9Q9H0W8 520 aaKnown RBP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 IL21Q9HBE4 155 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 HPS4Q9NQG7 708 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 POLR3BQ9NW08 1133 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 LRWD1Q9UFC0 647 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 KCNG1Q9UIX4 513 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 ZMYM5Q9UJ78 669 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 UBQLN1Q9UMX0 589 aaKnown RBP12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 DNM3Q9UQ16 869 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 STK24Q9Y6E0 443 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 ASPMQ8IZT6 3477 aa12.64□□□□□ -0.39
CLSTN3-209ENST00000539982 ZFYVE26Q68DK2 2539 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 EML5Q05BV3 1969 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 SPEGQ15772 3267 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 TTC26A0AVF1 554 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 OTOL1A6NHN0 477 aaPredicted RBP12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 SLC16A4O15374 487 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 CLDN3O15551 220 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 LARGE1O95461 756 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 EGFP01133 1207 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 CLTAP09496 248 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 CXCL8P10145 99 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 CEACAM1P13688 526 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 DRD1P21728 446 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 GALK1P51570 392 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 ZNF252P-AS1Q0IIN9 211 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 MAPK7Q13164 816 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 VEPH1Q14D04 833 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 KARSQ15046 597 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 SAFBQ15424 915 aaKnown RBP eCLIP12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 ME3Q16798 604 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 FBXO43Q4G163 708 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 SH3PXD2AQ5TCZ1 1133 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 ZPBP2Q6X784 338 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 SYT13Q7L8C5 426 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 CMTM8Q8IZV2 173 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 CHFRQ96EP1 664 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 KIF12Q96FN5 646 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 GCNAQ96QF7 691 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 LPIN3Q9BQK8 851 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 ADAM33Q9BZ11 813 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 EBF3Q9H4W6 596 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 FBRSL1Q9HCM7 1045 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 ANKFY1Q9P2R3 1169 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 EBF1Q9UH73 591 aa12.63□□□□□ -0.39
CLSTN3-209ENST00000539982 ANKRD11Q6UB99 2663 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 IGF2RP11717 2491 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 ATG2BQ96BY7 2078 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 SFI1A8K8P3 1242 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 E9PMD0 336 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 DCLK1O15075 740 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 XPOTO43592 962 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 JAK2O60674 1132 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 SPINK2P20155 84 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 CSRP1P21291 193 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 PAX3P23760 479 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 AVPR1AP37288 418 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 LILRA4P59901 499 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 MCL1Q07820 350 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 TAF12Q16514 161 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 TRIM68Q6AZZ1 485 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 RINT1Q6NUQ1 792 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 C1orf186Q6ZWK4 172 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms