RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PRPF40AO75400 957 aaKnown RBP12.45□□□□□ -0.42
RTN3-209ENST00000538995 ECI2O75521 394 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 TNNC2P02585 160 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 CEBPBP17676 345 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 SYKP43405 635 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 ALDH1A3P47895 512 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 EPHB3P54753 998 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 PTPN5P54829 565 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 DUSP4Q13115 394 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 PSMD2Q13200 908 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 DUOXA2Q1HG44 320 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 WSCD1Q658N2 575 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 PARM1Q6UWI2 310 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 NELFCDQ8IXH7 590 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 GRAMD1CQ8IYS0 662 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 DCP1BQ8IZD4 617 aaKnown RBP12.45□□□□□ -0.42
RTN3-209ENST00000538995 SIX5Q8N196 739 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 CSGALNACT2Q8N6G5 542 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 XXYLT1Q8NBI6 393 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 NOC3LQ8WTT2 800 aaKnown RBP12.45□□□□□ -0.42
RTN3-209ENST00000538995 TMEM174Q8WUU8 243 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 ING5Q8WYH8 240 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 PGLYRP2Q96PD5 576 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 RTP3Q9BQQ7 232 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 SLC39A2Q9NP94 309 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 SIX4Q9UIU6 781 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 AGAP1Q9UPQ3 857 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 R3HCC1Q9Y3T6 440 aaKnown RBP12.45□□□□□ -0.42
RTN3-209ENST00000538995 WDFY4Q6ZS81 3184 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 HUS1O60921 280 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 FGF19O95750 216 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 CCR2P41597 374 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 TUFMP49411 452 aaKnown RBP12.44□□□□□ -0.42
RTN3-209ENST00000538995 TSPY1Q01534 308 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 PFKPQ01813 784 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 BFSP1Q12934 665 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 MYO1EQ12965 1108 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 PSMD6Q15008 389 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 SLC39A12Q504Y0 691 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 CWF19L1Q69YN2 538 aaKnown RBP12.44□□□□□ -0.42
RTN3-209ENST00000538995 ITIH5Q86UX2 942 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 PDCL2Q8N4E4 241 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 TOP6BLQ8N6T0 577 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 ATAD1Q8NBU5 361 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 PRSS33Q8NF86 280 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 SPPL2BQ8TCT7 592 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 PSMG2Q969U7 264 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 FNBP1Q96RU3 617 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 TMEM209Q96SK2 561 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 CGRRF1Q99675 332 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 GPR88Q9GZN0 384 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 IRF2BPLQ9H1B7 796 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 DNAJC25Q9H1X3 360 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 CRISPLD1Q9H336 500 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 ARHGEF3Q9NR81 526 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 KMT2EQ8IZD2 1858 aa12.44□□□□□ -0.42
RTN3-209ENST00000538995 PTPRJQ12913 1337 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.43□□□□□ -0.42
RTN3-209ENST00000538995 KIF20AO95235 890 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 CFHP08603 1231 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 KRT19P08727 400 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 NPR3P17342 541 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 AOC1P19801 751 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 CYP2J2P51589 502 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 NDUFA8P51970 172 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 NUCB2P80303 420 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 MYL7Q01449 175 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 NHLH1Q02575 133 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 CYP24A1Q07973 514 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 VEPH1Q14D04 833 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 NFE2Q16621 373 aaPredicted RBP12.43□□□□□ -0.42
RTN3-209ENST00000538995 KMT5BQ4FZB7 885 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 IER5LQ5T953 404 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 PHLDB3Q6NSJ2 640 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 DPH6Q7L8W6 267 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 TMC8Q8IU68 726 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 SLC9A9Q8IVB4 645 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 TMEM105Q8N8V8 129 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 FSIP1Q8NA03 581 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 KIAA0895Q8NCT3 520 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 OR5B17Q8NGF7 314 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 GPR152Q8TDT2 470 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 CCDC47Q96A33 483 aaKnown RBP12.43□□□□□ -0.42
RTN3-209ENST00000538995 ELSPBP1Q96BH3 223 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 TCEAL4Q96EI5 215 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 MCRS1Q96EZ8 462 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 CCDC34Q96HJ3 373 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 CHAMP1Q96JM3 812 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 ACBD6Q9BR61 282 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 LRRC3Q9BY71 257 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 TRPV4Q9HBA0 871 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 ABCB6Q9NP58 842 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 L1RE1Q9UN81 338 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 SCN1AP35498 2009 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 NOTCH4Q99466 2003 aa12.43□□□□□ -0.42
RTN3-209ENST00000538995 KRBA1A5PL33 1030 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 TULP1O00294 542 aaPredicted RBP12.42□□□□□ -0.42
RTN3-209ENST00000538995 GABRDO14764 452 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 CLIC2O15247 247 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 GALR2O43603 387 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms