RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 MSL3P1P0C860 447 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 HSD17B4P51659 736 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 FOXO4P98177 505 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 CTTNQ14247 550 aaKnown RBP13.05□□□□□ -0.32
USP3-203ENST00000538686 RGS21Q2M5E4 152 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 MPRIPQ6WCQ1 1025 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 IFNL3Q8IZI9 196 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 ZNF713Q8N859 430 aaPredicted RBP13.05□□□□□ -0.32
USP3-203ENST00000538686 PCYOX1LQ8NBM8 494 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 OR7G1Q8NGA0 311 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 RAB3IL1Q8TBN0 382 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 CCDC127Q96BQ5 260 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 MED30Q96HR3 178 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 ZNF512BQ96KM6 892 aaPredicted RBP13.05□□□□□ -0.32
USP3-203ENST00000538686 STRBPQ96SI9 672 aaKnown RBP13.05□□□□□ -0.32
USP3-203ENST00000538686 CEP44Q9C0F1 390 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 LRRC19Q9H756 370 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 ADAMTS6Q9UKP5 1117 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 GRID1Q9ULK0 1009 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 PCDHA4Q9UN74 947 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 MYH3P11055 1940 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 ANKRD63C9JTQ0 380 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 RNMTO43148 476 aaKnown RBP13.04□□□□□ -0.32
USP3-203ENST00000538686 TYROBPO43914 113 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 CCNT2O60583 730 aaKnown RBP13.04□□□□□ -0.32
USP3-203ENST00000538686 DNAJA2O60884 412 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 STAM2O75886 525 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 SRGAP2CP0DJJ0 459 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 SRGAP2BP0DMP2 458 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 CETPP11597 493 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 RPA3P35244 121 aaPredicted RBP13.04□□□□□ -0.32
USP3-203ENST00000538686 ALDH3B2P48448 385 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 ZNF211Q13398 564 aaPredicted RBP13.04□□□□□ -0.32
USP3-203ENST00000538686 EDRF1Q3B7T1 1238 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 GRAMD1BQ3KR37 738 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 PARP10Q53GL7 1025 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 LVRNQ6Q4G3 990 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 ITIH5Q86UX2 942 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 LARGE2Q8N3Y3 721 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 GRK7Q8WTQ7 553 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 CALML4Q96GE6 196 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 LRGUKQ96M69 825 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 TSSK1BQ9BXA7 367 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 PAIP1Q9H074 479 aaKnown RBP13.04□□□□□ -0.32
USP3-203ENST00000538686 IFT52Q9Y366 437 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 RREB1Q92766 1687 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 EXOC1LA0A1B0GW35 172 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 CAPN14A8MX76 684 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 FOXO6A8MYZ6 492 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 ALOX15BO15296 676 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 TBCAO75347 108 aaKnown RBP13.04□□□□□ -0.32
USP3-203ENST00000538686 SULT1C4O75897 302 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 C8BP07358 591 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 THRAP10827 490 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 SCG2P13521 617 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 UCHL3P15374 230 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 KRT15P19012 456 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 HOXD10P28358 340 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 MECOMQ03112 1051 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 LRRC36Q1X8D7 754 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 PPP2R2DQ66LE6 453 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 COPS6Q7L5N1 327 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 TERB1Q8NA31 727 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 CALML6Q8TD86 181 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 UIMC1Q96RL1 719 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 EHD1Q9H4M9 534 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 DNAJC17Q9NVM6 304 aaKnown RBP13.04□□□□□ -0.32
USP3-203ENST00000538686 CRNNQ9UBG3 495 aaPredicted RBP13.04□□□□□ -0.32
USP3-203ENST00000538686 ASIC3Q9UHC3 531 aa13.04□□□□□ -0.32
USP3-203ENST00000538686 MYH11P35749 1972 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 PP2D1A8MPX8 630 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 CENPBD1B2RD01 187 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 TRAF5O00463 557 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 KPNA4O00629 521 aaPredicted RBP13.03□□□□□ -0.32
USP3-203ENST00000538686 SIN3BO75182 1162 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 DDAH1O94760 285 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 ZBTB11O95625 1053 aaPredicted RBP13.03□□□□□ -0.32
USP3-203ENST00000538686 KRT75O95678 551 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 RBP3P10745 1247 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 HOXD13P35453 343 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 GPC3P51654 580 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 MYBPC1Q00872 1141 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 CDK18Q07002 472 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 PTK6Q13882 451 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 KCTD19Q17RG1 926 aaPredicted RBP13.03□□□□□ -0.32
USP3-203ENST00000538686 CCDC14Q49A88 953 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 ARSHQ5FYA8 562 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 RARS2Q5T160 578 aaKnown RBP13.03□□□□□ -0.32
USP3-203ENST00000538686 MCF2L2Q86YR7 1114 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 TRIML2Q8N7C3 387 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 VGLL2Q8N8G2 317 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 ATP6V0D2Q8N8Y2 350 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 MINDY2Q8NBR6 621 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 SNX29Q8TEQ0 813 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 ALG3Q92685 438 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 ALKBH8Q96BT7 664 aaKnown RBP13.03□□□□□ -0.32
USP3-203ENST00000538686 DCUN1D1Q96GG9 259 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 NLRP4Q96MN2 994 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 ZSWIM1Q9BR11 485 aa13.03□□□□□ -0.32
USP3-203ENST00000538686 SLC39A3Q9BRY0 314 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms