RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 DNAJC24Q6P3W2 148 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 FRMD5Q7Z6J6 570 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 DNAAF5Q86Y56 855 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 DNAJC10Q8IXB1 793 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 KCTD6Q8NC69 237 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 PLA2G12BQ9BX93 195 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 CALN1Q9BXU9 219 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 NDEL1Q9GZM8 345 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 DDX3XO00571 662 aaKnown RBP eCLIP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 SOX5P35711 763 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 SLC16A2P36021 539 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 KCNJ1P48048 391 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 EIF2B2P49770 351 aaKnown RBP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 TRIM28Q13263 835 aaKnown RBP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 PRR23CQ6ZRP0 262 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 NCCRP1Q6ZVX7 275 aaPredicted RBP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 EME1Q96AY2 570 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 TRIM15Q9C019 465 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 INPP5FQ9Y2H2 1132 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 SNX5Q9Y5X3 404 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 TMEM221A6NGB7 291 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 F5H423 210 aaPredicted RBP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 ZNF263O14978 683 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 KIAA0391O15091 583 aaKnown RBP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 GSTA4O15217 222 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 AP1G1O43747 822 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 PCCAP05165 728 aaPredicted RBP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 GFAPP14136 432 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 TSHRP16473 764 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 KRT4P19013 534 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 TCN1P20061 433 aaPredicted RBP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 MXI1P50539 228 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 C16orf72Q14CZ0 275 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 MIIPQ5JXC2 388 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 HGSNATQ68CP4 663 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 NANOGNBQ7Z5D8 188 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 TRIM50Q86XT4 487 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 BRIP1Q9BX63 1249 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 KLHL25Q9H0H3 589 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 VPS11Q9H270 941 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 PSMC3IPQ9P2W1 217 aaPredicted RBP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 RSL24D1Q9UHA3 163 aaKnown RBP5.66□□□□□ -1.5
PTPRD-213ENST00000537002 NAGPAQ9UK23 515 aa5.66□□□□□ -1.5
PTPRD-213ENST00000537002 GOLGA8QA0A0J9YX86 632 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 ESYT2A0FGR8 921 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 GOLGA8OA6NCC3 632 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 USP17L3A6NCW0 530 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 USP17L4A6NCW7 530 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 GOLGA8NF8WBI6 632 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 H0YIN7 160 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 ATMINO43313 823 aaPredicted RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 KRT38O76015 456 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 TRIM49P0CI25 452 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 TRIM49CP0CI26 452 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 CRABP2P29373 138 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 ARPC4P59998 168 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 HPCAP84074 193 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 ZBTB41Q5SVQ8 909 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 USP17L1Q7RTZ2 530 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 MINDY2Q8NBR6 621 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 BIRC8Q96P09 236 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 C11orf70Q9BRQ4 267 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 MAF1Q9H063 256 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 BRD8Q9H0E9 1235 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 SYNPO2Q9UMS6 1093 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 PCDHA6Q9UN73 950 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 ZNF232Q9UNY5 417 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 PCDHA8Q9Y5H6 950 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 RNF225M0QZC1 329 aaPredicted RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 CHRNDQ07001 517 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 LRRC8EQ6NSJ5 796 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 CATSPER3Q86XQ3 398 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 CCDC24Q8N4L8 307 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 DDX50Q9BQ39 737 aaKnown RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 MRPS26Q9BYN8 205 aaKnown RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 SPATA31A5Q5VU36 1347 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 SPATA31A7Q8IWB4 1347 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 SYNJ2BP-COX16A0A087WUM0 186 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 DEAF1O75398 565 aaPredicted RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 CLPTM1O96005 669 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 CD58P19256 250 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 LIG4P49917 911 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 ARSEP51690 589 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 RPS6P62753 249 aaKnown RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 EN1Q05925 392 aaPredicted RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 KLRC3Q07444 240 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 HNRNPDQ14103 355 aaKnown RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 PRPSAP1Q14558 356 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 NAALADL2Q58DX5 795 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 FNDC8Q8TC99 324 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 HSPH1Q92598 858 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 OLFM1Q99784 485 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 DHX36Q9H2U1 1008 aaKnown RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 PREBQ9HCU5 417 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 FAM217BQ9NTX9 383 aaPredicted RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 COX16Q9P0S2 106 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 SEPT3Q9UH03 358 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 HERC5Q9UII4 1024 aaKnown RBP5.65□□□□□ -1.5
PTPRD-213ENST00000537002 LOC100653049A0A140TA62 436 aa5.65□□□□□ -1.5
PTPRD-213ENST00000537002 WDR64B1ANS9 1081 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms