RNA–Protein interactions for RNA: ENST00000536241.1

CDCA3-206, Transcript of cell division cycle associated 3, humanhuman

TSL 5

Gene CDCA3, Length 1,490 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-206ENST00000536241 FUT10Q6P4F1 479 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 TAS1R1Q7RTX1 841 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 OSTM1Q86WC4 334 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 CEP57Q86XR8 500 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 ADGRF2Q8IZF7 708 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 SLC39A11Q8N1S5 342 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 RBBP8NLQ8NC74 664 aaPredicted RBP12.3□□□□□ -0.44
CDCA3-206ENST00000536241 SP7Q8TDD2 431 aaPredicted RBP12.3□□□□□ -0.44
CDCA3-206ENST00000536241 IGSF21Q96ID5 467 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 TWNKQ96RR1 684 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 ELOVL4Q9GZR5 314 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 SNX25Q9H3E2 840 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 SPG21Q9NZD8 308 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 HMGXB4Q9UGU5 601 aa12.3□□□□□ -0.44
CDCA3-206ENST00000536241 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.29□□□□□ -0.44
CDCA3-206ENST00000536241 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.29□□□□□ -0.44
CDCA3-206ENST00000536241 A8MXQ7 604 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 CYP11A1P05108 521 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 PLEKP08567 350 aaPredicted RBP12.29□□□□□ -0.44
CDCA3-206ENST00000536241 CCDC172P0C7W6 258 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 ODC1P11926 461 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 WARSP23381 471 aaKnown RBP12.29□□□□□ -0.44
CDCA3-206ENST00000536241 TKTP29401 623 aaKnown RBP12.29□□□□□ -0.44
CDCA3-206ENST00000536241 BMP8BP34820 402 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 PTK2Q05397 1052 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 KLHL30Q0D2K2 578 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 INCA1Q0VD86 236 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 HGSNATQ68CP4 663 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 SLC47A2Q86VL8 602 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 METTL23Q86XA0 190 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 TMEM86AQ8N2M4 240 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 SLC4A11Q8NBS3 891 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 CLP1Q92989 425 aaKnown RBP12.29□□□□□ -0.44
CDCA3-206ENST00000536241 TMEM176AQ96HP8 235 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 B3GALT6Q96L58 329 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 HEXIM2Q96MH2 286 aaKnown RBP12.29□□□□□ -0.44
CDCA3-206ENST00000536241 NT5C1AQ9BXI3 368 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 HAUS4Q9H6D7 363 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 AAASQ9NRG9 546 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 ARHGAP20Q9P2F6 1191 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 PCDHB8Q9UN66 801 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 STXBP5LQ9Y2K9 1186 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 PCDHB12Q9Y5F1 795 aa12.29□□□□□ -0.44
CDCA3-206ENST00000536241 LINC01553A4QN01 128 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 SERPING1P05155 500 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 CYP11B1P15538 503 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 TYMPP19971 482 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 PRKCIP41743 596 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 LHX1P48742 406 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 ZNF132P52740 706 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 BPIFB4P59827 614 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 ELAVL2Q12926 359 aaKnown RBP12.28□□□□□ -0.44
CDCA3-206ENST00000536241 MEA1Q16626 185 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 ACOT1Q86TX2 421 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 UNC93AQ86WB7 457 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 TMEM139Q8IV31 216 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 TTC39CQ8N584 583 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 TMEM169Q96HH4 297 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 BAG1Q99933 345 aaPredicted RBP12.28□□□□□ -0.44
CDCA3-206ENST00000536241 LPIN3Q9BQK8 851 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 FAM124BQ9H5Z6 455 aaPredicted RBP12.28□□□□□ -0.44
CDCA3-206ENST00000536241 DDX43Q9NXZ2 648 aaKnown RBP12.28□□□□□ -0.44
CDCA3-206ENST00000536241 PUF60Q9UHX1 559 aaKnown RBP12.28□□□□□ -0.44
CDCA3-206ENST00000536241 DSEQ9UL01 958 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 CEP290O15078 2479 aa12.28□□□□□ -0.44
CDCA3-206ENST00000536241 SF3B1O75533 1304 aaKnown RBP eCLIP12.28□□□□□ -0.449e-6■■■■■ 68.9
CDCA3-206ENST00000536241 ARHGEF37A1IGU5 675 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 SYN3O14994 580 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 ATP2C2O75185 946 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 ARHGEF15O94989 841 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 EFEMP2O95967 443 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 FGFR3P22607 806 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 ACAT1P24752 427 aaKnown RBP12.27□□□□□ -0.44
CDCA3-206ENST00000536241 SSTR3P32745 418 aaPredicted RBP12.27□□□□□ -0.44
CDCA3-206ENST00000536241 BMPR1AP36894 532 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 EIF4A3P38919 411 aaKnown RBP12.27□□□□□ -0.44
CDCA3-206ENST00000536241 PBX2P40425 430 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 CDR1P51861 262 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 YWHAHQ04917 246 aaPredicted RBP12.27□□□□□ -0.44
CDCA3-206ENST00000536241 TDRD12Q587J7 1177 aaKnown RBP12.27□□□□□ -0.44
CDCA3-206ENST00000536241 KIAA0319Q5VV43 1072 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 OVOS1Q6IE37 1185 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 CYP26C1Q6V0L0 522 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 ZNF571Q7Z3V5 609 aaPredicted RBP12.27□□□□□ -0.44
CDCA3-206ENST00000536241 SPRED2Q7Z698 418 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 NOP9Q86U38 636 aaKnown RBP12.27□□□□□ -0.44
CDCA3-206ENST00000536241 FMNL3Q8IVF7 1028 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 CRYBG2Q8N1P7 616 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 THEM5Q8N1Q8 247 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 C12orf29Q8N999 325 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 KLHL23Q8NBE8 558 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 ZNF606Q8WXB4 792 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 TFAP2BQ92481 460 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 RTP3Q9BQQ7 232 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 VN1R3Q9BXE9 311 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 DPEP3Q9H4B8 488 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 NHEJ1Q9H9Q4 299 aaPredicted RBP12.27□□□□□ -0.44
CDCA3-206ENST00000536241 YBX2Q9Y2T7 364 aaKnown RBP12.27□□□□□ -0.44
CDCA3-206ENST00000536241 PCDHA11Q9Y5I1 949 aa12.27□□□□□ -0.44
CDCA3-206ENST00000536241 BZW2Q9Y6E2 419 aaKnown RBP12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms