RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 NPR3P17342 541 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 HOXD13P35453 343 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 CCR2P41597 374 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 EPHA5P54756 1037 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 GPC5P78333 572 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 PFKPQ01813 784 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 SURF1Q15526 300 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 CBWD2Q8IUF1 395 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 GRAMD1CQ8IYS0 662 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 HS6ST3Q8IZP7 471 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 CSGALNACT2Q8N6G5 542 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 TTC9BQ8N6N2 239 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 ATAD1Q8NBU5 361 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 ZNF507Q8TCN5 953 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 C2orf15Q8WU43 125 aaKnown RBP14.34□□□□□ -0.11
VPS28-211ENST00000530790 SCFD1Q8WVM8 642 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 FAM84AQ96KN4 292 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 SEPT5Q99719 369 aaPredicted RBP14.34□□□□□ -0.11
VPS28-211ENST00000530790 ZCWPW1Q9H0M4 648 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 SLC39A2Q9NP94 309 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 SERTAD1Q9UHV2 236 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 SLC27A5Q9Y2P5 690 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 TGFB1I1O43294 461 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 ACTN4O43707 911 aaKnown RBP14.33□□□□□ -0.12
VPS28-211ENST00000530790 TNNC2P02585 160 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 CMA1P23946 247 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 SNRPFP62306 86 aaKnown RBP14.33□□□□□ -0.12
VPS28-211ENST00000530790 RBP5P82980 135 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 TSPY1Q01534 308 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 SMARCB1Q12824 385 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 MYO1EQ12965 1108 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 VEPH1Q14D04 833 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 SNRNP35Q16560 246 aaKnown RBP14.33□□□□□ -0.12
VPS28-211ENST00000530790 BMT2Q1RMZ1 405 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 MGAT5BQ3V5L5 792 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 LMBRD2Q68DH5 695 aaPredicted RBP14.33□□□□□ -0.12
VPS28-211ENST00000530790 ITIH5Q86UX2 942 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 WDR49Q8IV35 697 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 DCP1BQ8IZD4 617 aaKnown RBP14.33□□□□□ -0.12
VPS28-211ENST00000530790 PDCL2Q8N4E4 241 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 ELSPBP1Q96BH3 223 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 BORCS6Q96GS4 357 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 SHDQ96IW2 340 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 DNAJC25Q9H1X3 360 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 SLITRK6Q9H5Y7 841 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 EXOC1Q9NV70 894 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 INTS13Q9NVM9 706 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 USP25Q9UHP3 1055 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 ZDHHC9Q9Y397 364 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 ASB3Q9Y575 518 aa14.33□□□□□ -0.12
VPS28-211ENST00000530790 NOTCH4Q99466 2003 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 A0A1B0GVL5 298 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 SOAT2O75908 522 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 FGF19O95750 216 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 FCARP24071 287 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 TUFMP49411 452 aaKnown RBP14.32□□□□□ -0.12
VPS28-211ENST00000530790 CYP2J2P51589 502 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 BECN1Q14457 450 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 TEAD2Q15562 447 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 FAM78AQ5JUQ0 283 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 PHLDB3Q6NSJ2 640 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 TMC8Q8IU68 726 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 CCDC105Q8IYK2 499 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 TMEM86AQ8N2M4 240 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 XXYLT1Q8NBI6 393 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 CXorf38Q8TB03 319 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 FAM200AQ8TCP9 573 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 SPPL2BQ8TCT7 592 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 ATOH1Q92858 354 aaPredicted RBP14.32□□□□□ -0.12
VPS28-211ENST00000530790 PSMG2Q969U7 264 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 PAGE5Q96GU1 130 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 ASB16Q96NS5 453 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 FNBP1Q96RU3 617 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 SCAND2PQ9GZW5 306 aaPredicted RBP14.32□□□□□ -0.12
VPS28-211ENST00000530790 ZFP14Q9HCL3 533 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 ABI2Q9NYB9 513 aaPredicted RBP14.32□□□□□ -0.12
VPS28-211ENST00000530790 CGNQ9P2M7 1197 aaKnown RBP14.32□□□□□ -0.12
VPS28-211ENST00000530790 SIX4Q9UIU6 781 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 L1RE1Q9UN81 338 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 SNX9Q9Y5X1 595 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 PTPRJQ12913 1337 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 SCN1AP35498 2009 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 DOCK6Q96HP0 2047 aa14.32□□□□□ -0.12
VPS28-211ENST00000530790 A0A1W2PRU2 124 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 H0Y858 1186 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 NRG2O14511 850 aaPredicted RBP14.31□□□□□ -0.12
VPS28-211ENST00000530790 CLIC2O15247 247 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 PI15O43692 258 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 MOSPD3O75425 235 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 MYL1P05976 194 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 DLATP10515 647 aaKnown RBP14.31□□□□□ -0.12
VPS28-211ENST00000530790 GJA1P17302 382 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 MYL7Q01449 175 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 PRKCQQ04759 706 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 MLF2Q15773 248 aaPredicted RBP14.31□□□□□ -0.12
VPS28-211ENST00000530790 NFE2Q16621 373 aaPredicted RBP14.31□□□□□ -0.12
VPS28-211ENST00000530790 KNOP1Q1ED39 458 aaKnown RBP14.31□□□□□ -0.12
VPS28-211ENST00000530790 DUOXA2Q1HG44 320 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 TANGO2Q6ICL3 276 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 ALYREFQ86V81 257 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms