RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 M0R3H8 397 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 KIAA0391O15091 583 aaKnown RBP3.88□□□□□ -1.79
CD44-229ENST00000528672 MTSS1O43312 755 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 GPR32O75388 356 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 SKAP2O75563 359 aaPredicted RBP3.88□□□□□ -1.79
CD44-229ENST00000528672 AGR2O95994 175 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 SRGNP10124 158 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 NPR1P16066 1061 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 ZNF20P17024 532 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 EN2P19622 333 aaPredicted RBP3.88□□□□□ -1.79
CD44-229ENST00000528672 DDIT3P35638 169 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 EXOSC9Q06265 439 aaKnown RBP3.88□□□□□ -1.79
CD44-229ENST00000528672 MPEG1Q2M385 716 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 Q6ZSN1 163 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 PDZD4Q76G19 769 aaPredicted RBP3.88□□□□□ -1.79
CD44-229ENST00000528672 POLNQ7Z5Q5 900 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 CHST13Q8NET6 341 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 RABGGTAQ92696 567 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 LOXL4Q96JB6 756 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 ZNF512Q96ME7 567 aaPredicted RBP3.88□□□□□ -1.79
CD44-229ENST00000528672 MRI1Q9BV20 369 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 BRIP1Q9BX63 1249 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 BCO1Q9HAY6 547 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 AFF4Q9UHB7 1163 aaKnown RBP3.88□□□□□ -1.79
CD44-229ENST00000528672 TCAF1Q9Y4C2 921 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 AATKQ6ZMQ8 1374 aa3.88□□□□□ -1.79
CD44-229ENST00000528672 A0A1W2PPC4 97 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 GOLGA6L3A6NEY3 463 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 PLSCR1O15162 318 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 ZNF185O15231 689 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 GRM6O15303 877 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 HOXA3O43365 443 aaPredicted RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 EPB41L2O43491 1005 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 TBC1D4O60343 1298 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 PLA2G6O60733 806 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 ZNF623O75123 536 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 JUNP05412 331 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 CD1AP06126 327 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 HSP90AA1P07900 732 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 EEF1GP26641 437 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 ALDH9A1P49189 494 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 DDX10Q13206 875 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 TBX2Q13207 712 aaPredicted RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 MRPL49Q13405 166 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 GRM7Q14831 915 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 R3HDM1Q15032 1099 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 SLC35G1Q2M3R5 365 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 ZACNQ401N2 412 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 C3orf38Q5JPI3 329 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 ZNF529Q6P280 563 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 BEND5Q7L4P6 421 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 ZNF572Q7Z3I7 529 aaPredicted RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 FAM9BQ8IZU0 186 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 PPHLN1Q8NEY8 458 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 OR6B3Q8NGW1 331 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 TRAPPC12Q8WVT3 735 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 KBTBD7Q8WVZ9 684 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 LRIG1Q96JA1 1093 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 MRGPRX1Q96LB2 322 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 C8orf49Q96NF6 230 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 MPHOSPH9Q99550 1183 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 EIF2AK1Q9BQI3 630 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 TLR10Q9BXR5 811 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 MRPL46Q9H2W6 279 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 ZNF768Q9H5H4 540 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 SPON1Q9HCB6 807 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 SERHLQ9NQF3 203 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 LANCL2Q9NS86 450 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 TMEM140Q9NV12 185 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 AURKAIP1Q9NWT8 199 aaPredicted RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 STK32BQ9NY57 414 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 RRN3Q9NYV6 651 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 MYO1AQ9UBC5 1043 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 LRRFIP2Q9Y608 721 aaKnown RBP3.87□□□□□ -1.79
CD44-229ENST00000528672 SCINQ9Y6U3 715 aa3.87□□□□□ -1.79
CD44-229ENST00000528672 E9PLN8 166 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 HNRNPDLO14979 420 aaKnown RBP3.86□□□□□ -1.79
CD44-229ENST00000528672 THAP12O43422 761 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 ZFPL1O95159 310 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 GASTP01350 101 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 ITGB1P05556 798 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 DHRS4L1P0CG22 281 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 INSRRP14616 1297 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 FGFR2P21802 821 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 COMTP21964 271 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 PRDX5P30044 214 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 PDIA3P30101 505 aaKnown RBP3.86□□□□□ -1.79
CD44-229ENST00000528672 CASP2P42575 452 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 KCNJ5P48544 419 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 GZMKP49863 264 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 SCNN1GP51170 649 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 CHN2P52757 468 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 SOX8P57073 446 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 GEMIN4P57678 1058 aaKnown RBP3.86□□□□□ -1.79
CD44-229ENST00000528672 CTXN1P60606 82 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 PSMC1P62191 440 aaKnown RBP3.86□□□□□ -1.79
CD44-229ENST00000528672 NOMO3P69849 1222 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 PRKG1Q13976 671 aa3.86□□□□□ -1.79
CD44-229ENST00000528672 BOP1Q14137 746 aaKnown RBP3.86□□□□□ -1.79
CD44-229ENST00000528672 SIM2Q14190 667 aaPredicted RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms