RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FAM124BQ9H5Z6 455 aaPredicted RBP22.01■■□□□ 1.11
VPS28-209ENST00000528142 GDF3Q9NR23 364 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 HMGXB4Q9UGU5 601 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 SCINQ9Y6U3 715 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 MYO1FO00160 1098 aa22■■□□□ 1.11
VPS28-209ENST00000528142 RAD51CO43502 376 aa22■■□□□ 1.11
VPS28-209ENST00000528142 PLA2G4AP47712 749 aa22■■□□□ 1.11
VPS28-209ENST00000528142 INCA1Q0VD86 236 aa22■■□□□ 1.11
VPS28-209ENST00000528142 DENND1BQ6P3S1 775 aa22■■□□□ 1.11
VPS28-209ENST00000528142 TMEM176AQ96HP8 235 aa22■■□□□ 1.11
VPS28-209ENST00000528142 NAP1L3Q99457 506 aaPredicted RBP22■■□□□ 1.11
VPS28-209ENST00000528142 SRRDQ9UH36 339 aa22■■□□□ 1.11
VPS28-209ENST00000528142 NR2E1Q9Y466 385 aa22■■□□□ 1.11
VPS28-209ENST00000528142 SART1O43290 800 aaKnown RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 MED7O43513 233 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 CALB1P05937 261 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 PYGMP11217 842 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 CD19P15391 556 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 XKR4Q5GH76 650 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 GDF6Q6KF10 455 aaPredicted RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 AADACL2Q6P093 401 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 ZNF296Q8WUU4 475 aaPredicted RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 PARVAQ9NVD7 372 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 TUBGCP4Q9UGJ1 667 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 CEP350Q5VT06 3117 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 PROSCO94903 275 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 HEXIM1O94992 359 aaKnown RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 AKAP5P24588 427 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 CCND3P30281 292 aaPredicted RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 MRPS6P82932 125 aaKnown RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 PTPN11Q06124 597 aaPredicted RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 FAM228AQ86W67 206 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 GSPT2Q8IYD1 628 aaKnown RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 KRT222Q8N1A0 295 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 KLHDC9Q8NEP7 349 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 FEZF2Q8TBJ5 459 aa21.99■■□□□ 1.11
VPS28-209ENST00000528142 AENQ8WTP8 325 aaKnown RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 C18orf25Q96B23 403 aaPredicted RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 BARX2Q9UMQ3 279 aaPredicted RBP21.99■■□□□ 1.11
VPS28-209ENST00000528142 PPEF2O14830 753 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 RWDD2BP57060 319 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 MYO1EQ12965 1108 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 ORC1Q13415 861 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 CCSAPQ6IQ19 270 aaPredicted RBP21.98■■□□□ 1.11
VPS28-209ENST00000528142 IFT20Q8IY31 132 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 BEST2Q8NFU1 509 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 DDX47Q9H0S4 455 aaKnown RBP21.98■■□□□ 1.11
VPS28-209ENST00000528142 RNF39Q9H2S5 420 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 SLITRK6Q9H5Y7 841 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 XPNPEP3Q9NQH7 507 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 CEP83Q9Y592 693 aa21.98■■□□□ 1.11
VPS28-209ENST00000528142 TRIP12Q14669 1992 aaPredicted RBP21.97■■□□□ 1.11
VPS28-209ENST00000528142 SCN10AQ9Y5Y9 1956 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 BHMG1C9JSJ3 638 aaPredicted RBP21.97■■□□□ 1.11
VPS28-209ENST00000528142 CASP8Q14790 479 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 GLRA4Q5JXX5 417 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 TTC39CQ8N584 583 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 LRRC52Q8N7C0 313 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 SMG8Q8ND04 991 aaKnown RBP21.97■■□□□ 1.11
VPS28-209ENST00000528142 WNT8BQ93098 351 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 TSPAN18Q96SJ8 248 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 APOL6Q9BWW8 343 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 UBXN6Q9BZV1 441 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 EPB41L5Q9HCM4 733 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 TRPV2Q9Y5S1 764 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 CDY2AQ9Y6F7 541 aa21.97■■□□□ 1.11
VPS28-209ENST00000528142 SMIM28A0A1B0GU29 152 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 TMEM191CA6NGB0 347 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 ZSCAN5CA6NGD5 496 aaPredicted RBP21.96■■□□□ 1.11
VPS28-209ENST00000528142 TLR3O15455 904 aaKnown RBP21.96■■□□□ 1.11
VPS28-209ENST00000528142 GJB6O95452 261 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 PRKAR2AP13861 404 aaKnown RBP21.96■■□□□ 1.11
VPS28-209ENST00000528142 KCNE1P15382 129 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 GUCY2DQ02846 1103 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 SERINC5Q86VE9 423 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 SESTD1Q86VW0 696 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 ERICH1Q86X53 443 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 CYTH4Q9UIA0 394 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 UBQLN1Q9UMX0 589 aaKnown RBP21.96■■□□□ 1.11
VPS28-209ENST00000528142 IPPQ9Y573 584 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 ASGR1P07306 291 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 VDRP11473 427 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 NDST1P52848 882 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 PPP1R15BQ5SWA1 713 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 SEL1L2Q5TEA6 688 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 C9orf57Q5W0N0 161 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 RPAINQ86UA6 219 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 PLEKHA4Q9H4M7 779 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 ERVK-5Q9HDB9 667 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 SAGE1Q9NXZ1 904 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.96■■□□□ 1.11
VPS28-209ENST00000528142 RALGAPA2Q2PPJ7 1873 aa21.96■■□□□ 1.11
VPS28-209ENST00000528142 CITO14578 2027 aa21.95■■□□□ 1.11
VPS28-209ENST00000528142 HSPA6P17066 643 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 CST5P28325 142 aaPredicted RBP21.95■■□□□ 1.1
VPS28-209ENST00000528142 MAN1A1P33908 653 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 RPL7AP62424 266 aaKnown RBP21.95■■□□□ 1.1
VPS28-209ENST00000528142 CBX1P83916 185 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 CNGA2Q16280 664 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 KCNA10Q16322 511 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms