RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 MCEEQ96PE7 176 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 CTNNAL1Q9UBT7 734 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 PCDHGC3Q9UN70 934 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 ZNF148Q9UQR1 794 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 IVNS1ABPQ9Y6Y0 642 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 LOC285556D6RIA3 1793 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 PI4K2BG5E9Z4 385 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 ATF7P17544 494 aaPredicted RBP22.45■■□□□ 1.18
VPS28-205ENST00000526204 MAPK6Q16659 721 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 ATP13A4Q4VNC1 1196 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 SWT1Q5T5J6 900 aaKnown RBP22.45■■□□□ 1.18
VPS28-205ENST00000526204 MFSD7Q6UXD7 560 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 SPOCD1Q6ZMY3 1216 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 ARHGEF18Q6ZSZ5 1173 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 TRPM8Q7Z2W7 1104 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 NIPA2Q8N8Q9 360 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.45■■□□□ 1.187e-9■□□□□ 10.3
VPS28-205ENST00000526204 CKAP2Q8WWK9 683 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 PWWP2AQ96N64 755 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 TTC25Q96NG3 672 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 DNPEPQ9ULA0 475 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 NAALADL1Q9UQQ1 740 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 DNALI1O14645 258 aaPredicted RBP22.44■■□□□ 1.18
VPS28-205ENST00000526204 KRT10P13645 584 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 ZNF252P-AS1Q0IIN9 211 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 MKRN3Q13064 507 aaKnown RBP22.44■■□□□ 1.18
VPS28-205ENST00000526204 LRRC14Q15048 493 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 TFDP3Q5H9I0 405 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 KAZNQ674X7 775 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 ALLCQ8N6M5 410 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 MGARPQ8TDB4 240 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 C2orf40Q9H1Z8 148 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 GGA3Q9NZ52 723 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 CPSF3Q9UKF6 684 aaKnown RBP22.44■■□□□ 1.18
VPS28-205ENST00000526204 STRIP2Q9ULQ0 834 aa22.44■■□□□ 1.18
VPS28-205ENST00000526204 TTLL13PA6NNM8 815 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 TCP11X1B4DZS4 312 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 BRD2P25440 801 aaKnown RBP22.43■■□□□ 1.18
VPS28-205ENST00000526204 YWHAEP62258 255 aaKnown RBP22.43■■□□□ 1.18
VPS28-205ENST00000526204 LAMTOR4Q0VGL1 99 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 NR1H3Q13133 447 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 PPP1R15BQ5SWA1 713 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 GPAT2Q6NUI2 795 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 ERICH1Q86X53 443 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 FUKQ8N0W3 1084 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 SGSM3Q96HU1 749 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 C9orf72Q96LT7 481 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 PLCD4Q9BRC7 762 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 KLHL11Q9NVR0 708 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 SLC12A4Q9UP95 1085 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 USP15Q9Y4E8 981 aaPredicted RBP22.43■■□□□ 1.18
VPS28-205ENST00000526204 LCTP09848 1927 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 SOWAHBA6NEL2 793 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 F8VP50 259 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 ATP2C2O75185 946 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 OAS1P00973 400 aaKnown RBP22.43■■□□□ 1.18
VPS28-205ENST00000526204 PRKCBP05771 671 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 CREB1P16220 341 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 GTF2A1P52655 376 aaPredicted RBP22.43■■□□□ 1.18
VPS28-205ENST00000526204 PPP1R21Q6ZMI0 780 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 NKIRAS1Q9NYS0 192 aa22.43■■□□□ 1.18
VPS28-205ENST00000526204 SUN1O94901 812 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 TCF4P15884 667 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 ARSEP51690 589 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 MORF4L2Q15014 288 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 ANKRD42Q8N9B4 389 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 TRPM4Q8TD43 1214 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 NKD2Q969F2 451 aaPredicted RBP22.42■■□□□ 1.18
VPS28-205ENST00000526204 EURLQ9NYK6 297 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 BTBD7Q9P203 1132 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 TPX2Q9ULW0 747 aaKnown RBP22.42■■□□□ 1.18
VPS28-205ENST00000526204 hCG_1818297A0A087WSY0 165 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 VGLL3A8MV65 326 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 ZBTB7AO95365 584 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 ITGAVP06756 1048 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 SRGAP2CP0DJJ0 459 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 POLR2BP30876 1174 aaKnown RBP22.42■■□□□ 1.18
VPS28-205ENST00000526204 NF2P35240 595 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 VCPP55072 806 aaKnown RBP22.42■■□□□ 1.18
VPS28-205ENST00000526204 ZNF699Q32M78 642 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 SCARA3Q6AZY7 606 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 CYB5D1Q6P9G0 228 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 POLNQ7Z5Q5 900 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 CYP4X1Q8N118 509 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 RNF149Q8NC42 400 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 FHDC1Q9C0D6 1143 aaPredicted RBP22.42■■□□□ 1.18
VPS28-205ENST00000526204 HAUS2Q9NVX0 235 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 EFR3BQ9Y2G0 817 aa22.42■■□□□ 1.18
VPS28-205ENST00000526204 ZNF394Q53GI3 561 aa22.41■■□□□ 1.18
VPS28-205ENST00000526204 SRRM1Q8IYB3 904 aaKnown RBP22.41■■□□□ 1.18
VPS28-205ENST00000526204 MPHOSPH6Q99547 160 aaKnown RBP22.41■■□□□ 1.18
VPS28-205ENST00000526204 SAYSD1Q9NPB0 183 aa22.41■■□□□ 1.18
VPS28-205ENST00000526204 UBN1Q9NPG3 1134 aa22.41■■□□□ 1.18
VPS28-205ENST00000526204 FGFR1OP2Q9NVK5 253 aa22.41■■□□□ 1.18
VPS28-205ENST00000526204 TBK1Q9UHD2 729 aa22.41■■□□□ 1.18
VPS28-205ENST00000526204 SSC5DA1L4H1 1573 aa22.41■■□□□ 1.18
VPS28-205ENST00000526204 ABLIM1O14639 778 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 TNNC2P02585 160 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 CETPP11597 493 aa22.4■■□□□ 1.18
VPS28-205ENST00000526204 STX2P32856 288 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms