RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 SMYD4Q8IYR2 804 aaPredicted RBP12.38□□□□□ -0.43
VCAN-212ENST00000515397 PDCL2Q8N4E4 241 aa12.38□□□□□ -0.43
VCAN-212ENST00000515397 STKLD1Q8NE28 680 aa12.38□□□□□ -0.43
VCAN-212ENST00000515397 GPR152Q8TDT2 470 aa12.38□□□□□ -0.43
VCAN-212ENST00000515397 ZNF512Q96ME7 567 aaPredicted RBP12.38□□□□□ -0.43
VCAN-212ENST00000515397 KXD1Q9BQD3 176 aa12.38□□□□□ -0.43
VCAN-212ENST00000515397 GZF1Q9H116 711 aaPredicted RBP12.38□□□□□ -0.43
VCAN-212ENST00000515397 KCTD10Q9H3F6 313 aa12.38□□□□□ -0.43
VCAN-212ENST00000515397 YIPF1Q9Y548 306 aa12.38□□□□□ -0.43
VCAN-212ENST00000515397 DOCK8Q8NF50 2099 aa12.38□□□□□ -0.43
VCAN-212ENST00000515397 NOTCH4Q99466 2003 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 GOLGA6L4A6NEF3 574 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 GADD45BO75293 160 aaPredicted RBP12.37□□□□□ -0.43
VCAN-212ENST00000515397 TNNC2P02585 160 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 CYP11A1P05108 521 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 VCPP55072 806 aaKnown RBP12.37□□□□□ -0.43
VCAN-212ENST00000515397 HTR4Q13639 388 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 SDHAF4Q5VUM1 108 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 TRAPPC11Q7Z392 1133 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 NPAS3Q8IXF0 933 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 UBALD2Q8IYN6 164 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 THEM5Q8N1Q8 247 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 GIPC2Q8TF65 315 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 FAM122AQ96E09 287 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 EEF2KMTQ96G04 330 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 HPDLQ96IR7 371 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 ZSWIM3Q96MP5 696 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 FNBP1Q96RU3 617 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 SEPT5Q99719 369 aaPredicted RBP12.37□□□□□ -0.43
VCAN-212ENST00000515397 LPIN3Q9BQK8 851 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 PLA2G2FQ9BZM2 168 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 ZCWPW1Q9H0M4 648 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 DNAJC25Q9H1X3 360 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 KIAA1586Q9HCI6 787 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.37□□□□□ -0.43
VCAN-212ENST00000515397 IGSF9Q9P2J2 1179 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 FBXL21Q9UKT6 434 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 ITGA11Q9UKX5 1188 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 CA14Q9ULX7 337 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.37□□□□□ -0.43
VCAN-212ENST00000515397 UBE4BO95155 1302 aa12.37□□□□□ -0.43
VCAN-212ENST00000515397 ANHXE9PGG2 379 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 KIAA0391O15091 583 aaKnown RBP12.36□□□□□ -0.43
VCAN-212ENST00000515397 HUS1O60921 280 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 ATP2C2O75185 946 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 MOSPD3O75425 235 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 PDGFRBP09619 1106 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 LMO2P25791 158 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 ALDH1A3P47895 512 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 GPR15P49685 360 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 GPC5P78333 572 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 DLG4P78352 724 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 PSMD2Q13200 908 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 SNW1Q13573 536 aaKnown RBP12.36□□□□□ -0.43
VCAN-212ENST00000515397 MYBPC2Q14324 1141 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 PSMD6Q15008 389 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 SOWAHAQ2M3V2 549 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 MGAT5BQ3V5L5 792 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 CEP135Q66GS9 1140 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 ISM2Q6H9L7 571 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 TANGO2Q6ICL3 276 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 IQCEQ6IPM2 695 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 FMR1NBQ8N0W7 255 aaPredicted RBP12.36□□□□□ -0.43
VCAN-212ENST00000515397 FLCNQ8NFG4 579 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 MFSD14AQ96MC6 490 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 ZNF560Q96MR9 790 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 CGRRF1Q99675 332 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 PI4K2AQ9BTU6 479 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 DDX43Q9NXZ2 648 aaKnown RBP12.36□□□□□ -0.43
VCAN-212ENST00000515397 ABI2Q9NYB9 513 aaPredicted RBP12.36□□□□□ -0.43
VCAN-212ENST00000515397 DSEQ9UL01 958 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 R3HCC1Q9Y3T6 440 aaKnown RBP12.36□□□□□ -0.43
VCAN-212ENST00000515397 DENND4AQ7Z401 1863 aa12.36□□□□□ -0.43
VCAN-212ENST00000515397 STK25O00506 426 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 PI15O43692 258 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 RHOBTB3O94955 611 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 NR3C1P04150 777 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 PLA2G5P39877 138 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 PNPLA4P41247 253 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 EPHB3P54753 998 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 MYL6P60660 151 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 SURF1Q15526 300 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 TEAD2Q15562 447 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 PRSS36Q5K4E3 855 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 STXBP5Q5T5C0 1151 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 CYP4A22Q5TCH4 519 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 PDZD4Q76G19 769 aaPredicted RBP12.35□□□□□ -0.43
VCAN-212ENST00000515397 RTL10Q7L3V2 364 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 BMP8AQ7Z5Y6 402 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 DNAJB7Q7Z6W7 309 aaPredicted RBP12.35□□□□□ -0.43
VCAN-212ENST00000515397 WDR49Q8IV35 697 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 SUGP1Q8IWZ8 645 aaKnown RBP12.35□□□□□ -0.43
VCAN-212ENST00000515397 ADGRF2Q8IZF7 708 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 SIX5Q8N196 739 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 ELMOD1Q8N336 334 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 FBXL6Q8N531 539 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 LRRC52Q8N7C0 313 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 ENGASEQ8NFI3 743 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 FAM200AQ8TCP9 573 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 MMS19Q96T76 1030 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms