RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 GRB10Q13322 594 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 MTMR2Q13614 643 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 RASA2Q15283 850 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.78□□□□□ -0.522e-7■■■■■ 102.3
TCOF1-211ENST00000513346 SLC30A5Q8TAD4 765 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 WDR60Q8WVS4 1066 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 C10orf88Q9H8K7 445 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF70Q9UC06 446 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-211ENST00000513346 AFG3L2Q9Y4W6 797 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 SLC16A4O15374 487 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 SLC26A4O43511 780 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 EYA4O95677 639 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 NMT1P30419 496 aaKnown RBP11.78□□□□□ -0.52
TCOF1-211ENST00000513346 RGS2P41220 211 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 MORF4L2Q15014 288 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 PKN1Q16512 942 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 EARS2Q5JPH6 523 aaKnown RBP11.78□□□□□ -0.52
TCOF1-211ENST00000513346 SLC10A5Q5PT55 438 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 OR6B2Q6IFH4 312 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 NT5DC3Q86UY8 548 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 DAGLBQ8NCG7 672 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 HSPH1Q92598 858 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 MKNK1Q9BUB5 465 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF302Q9NR11 478 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 BAZ2BQ9UIF8 2168 aaKnown RBP11.78□□□□□ -0.52
TCOF1-211ENST00000513346 PI4K2BG5E9Z4 385 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 HNRNPH3P31942 346 aaKnown RBP11.78□□□□□ -0.52
TCOF1-211ENST00000513346 MMP13P45452 471 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF157P51786 506 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-211ENST00000513346 PPIDQ08752 370 aaKnown RBP11.78□□□□□ -0.52
TCOF1-211ENST00000513346 COG2Q14746 738 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 PARP6Q2NL67 630 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 Q4G0T1 1027 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 CEP55Q53EZ4 464 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 C16orf89Q6UX73 402 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 INPP4AQ96PE3 977 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-211ENST00000513346 CAAP1Q9H8G2 361 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 NYAP2Q9P242 653 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 ATXN10Q9UBB4 475 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 DEAF1O75398 565 aaPredicted RBP11.77□□□□□ -0.52
TCOF1-211ENST00000513346 PSMC5P62195 406 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 OCRLQ01968 901 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 AUHQ13825 339 aaKnown RBP11.77□□□□□ -0.52
TCOF1-211ENST00000513346 GSTA3Q16772 222 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF667Q5HYK9 610 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 ADGRA1Q86SQ6 560 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 ATP8B4Q8TF62 1192 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 GTF3C2Q8WUA4 911 aaPredicted RBP11.77□□□□□ -0.52
TCOF1-211ENST00000513346 FAM151AQ8WW52 585 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 JADE3Q92613 823 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 REEP2Q9BRK0 252 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 TMEM120AQ9BXJ8 343 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 FHDC1Q9C0D6 1143 aaPredicted RBP11.77□□□□□ -0.52
TCOF1-211ENST00000513346 TAGLN3Q9UI15 199 aa11.77□□□□□ -0.52
TCOF1-211ENST00000513346 LOC100653049A0A140TA62 436 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 KRT34O76011 436 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 FESP07332 822 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 SNRPAP09012 282 aaKnown RBP11.77□□□□□ -0.53
TCOF1-211ENST00000513346 ARPP19P56211 112 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 C3orf67Q6ZVT6 689 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 ARMCX2Q7L311 632 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 KIAA0895Q8NCT3 520 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 HEXIM2Q96MH2 286 aaKnown RBP11.77□□□□□ -0.53
TCOF1-211ENST00000513346 MMP19Q99542 508 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 NDNQ99608 321 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 LXNQ9BS40 222 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 TMEM117Q9H0C3 514 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 SLC38A10Q9HBR0 1119 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 KIAA1586Q9HCI6 787 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF229Q9UJW7 825 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 GTF3C4Q9UKN8 822 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 STARD13Q9Y3M8 1113 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 DENND3A2RUS2 1198 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 DPPA5A6NC42 116 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 ATMINO43313 823 aaPredicted RBP11.77□□□□□ -0.53
TCOF1-211ENST00000513346 ENTPD5O75356 428 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 KRT75O95678 551 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 MYBP10242 640 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 PHKA2P46019 1235 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 HUNKP57058 714 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 DCTN2Q13561 401 aaKnown RBP11.77□□□□□ -0.53
TCOF1-211ENST00000513346 SLC45A4Q5BKX6 768 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 EFHC1Q5JVL4 640 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 LPAR1Q92633 364 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 FAM111AQ96PZ2 611 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 FAM118BQ9BPY3 351 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 DDX18Q9NVP1 670 aaKnown RBP11.77□□□□□ -0.53
TCOF1-211ENST00000513346 PKD2L2Q9NZM6 624 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 CTNNAL1Q9UBT7 734 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 SEPT3Q9UH03 358 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 STRIP2Q9ULQ0 834 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 NWD1Q149M9 1564 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 SPAG6O75602 509 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 SEC24DO94855 1032 aaPredicted RBP11.77□□□□□ -0.53
TCOF1-211ENST00000513346 PPP4CP60510 307 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 IL1RL1Q01638 556 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 SFSWAPQ12872 951 aaKnown RBP11.77□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF268Q14587 947 aaPredicted RBP11.77□□□□□ -0.53
TCOF1-211ENST00000513346 EFTUD2Q15029 972 aaKnown RBP eCLIP11.77□□□□□ -0.532e-6■■■■■ 57.6
TCOF1-211ENST00000513346 TMEM270Q6UE05 265 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms