RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 CGRRF1Q99675 332 aa12.51□□□□□ -0.41
SH3RF1-205ENST00000511421 L1RE1Q9UN81 338 aa12.51□□□□□ -0.41
SH3RF1-205ENST00000511421 YIPF1Q9Y548 306 aa12.51□□□□□ -0.41
SH3RF1-205ENST00000511421 TSC2P49815 1807 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 PDXKO00764 312 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 NRG2O14511 850 aaPredicted RBP12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 EXOC3O60645 756 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 TNNC2P02585 160 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 DLATP10515 647 aaKnown RBP12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 CCR2P41597 374 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 BFSP1Q12934 665 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 KCNB1Q14721 858 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 PRSS36Q5K4E3 855 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 TRAPPC11Q7Z392 1133 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 LIMS2Q7Z4I7 341 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 NPAS3Q8IXF0 933 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 THEM5Q8N1Q8 247 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 SLC44A3Q8N4M1 653 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 TTC9BQ8N6N2 239 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 PLEKHO2Q8TD55 490 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 ZNF516Q92618 1163 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 PBXIP1Q96AQ6 731 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 CCDC127Q96BQ5 260 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 FNBP1Q96RU3 617 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 CORO1BQ9BR76 489 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 DNAJC25Q9H1X3 360 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 DUSP12Q9UNI6 340 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 SLC27A5Q9Y2P5 690 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 MRPS23Q9Y3D9 190 aaKnown RBP12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 ZNF318Q5VUA4 2279 aa12.5□□□□□ -0.41
SH3RF1-205ENST00000511421 NARSO43776 548 aaKnown RBP12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 PRPF40AO75400 957 aaKnown RBP12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 CST3P01034 146 aaPredicted RBP12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 PDGFBP01127 241 aaPredicted RBP12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 TNNI1P19237 187 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 EPHA5P54756 1037 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 SLC39A12Q504Y0 691 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 PARM1Q6UWI2 310 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 OSTM1Q86WC4 334 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 HS6ST3Q8IZP7 471 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 TMEM86AQ8N2M4 240 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 TOP6BLQ8N6T0 577 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 ST13P5Q8NFI4 369 aaPredicted RBP12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 FGF14Q92915 247 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 CCDC47Q96A33 483 aaKnown RBP12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 TCEAL4Q96EI5 215 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 HPDLQ96IR7 371 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 RPP25Q9BUL9 199 aaKnown RBP12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 LRRC3Q9BY71 257 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 HSFX1Q9UBD0 423 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 CIZ1Q9ULV3 898 aaPredicted RBP12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 TRAF3IP3Q9Y228 551 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 SNX9Q9Y5X1 595 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 NUMBLQ9Y6R0 609 aa12.49□□□□□ -0.41
SH3RF1-205ENST00000511421 GOLGA6L4A6NEF3 574 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 GABRDO14764 452 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 HUS1O60921 280 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 MOSPD3O75425 235 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 MICAL2O94851 1124 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 NR3C1P04150 777 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 CEBPBP17676 345 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 CASP4P49662 377 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 MYO1EQ12965 1108 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 PNOCQ13519 176 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 SOWAHAQ2M3V2 549 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 IQCEQ6IPM2 695 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 ELMOD1Q8N336 334 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 FBXL6Q8N531 539 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 SPATA18Q8TC71 538 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 PARD3BQ8TEW8 1205 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 ING5Q8WYH8 240 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 ZNF512Q96ME7 567 aaPredicted RBP12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 SOAT2O75908 522 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 CDR1P51861 262 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 CLDN10P78369 228 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 FAM160A1Q05DH4 1040 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 SMARCB1Q12824 385 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 PLD1Q13393 1074 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 PDZD4Q76G19 769 aaPredicted RBP12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 DPH6Q7L8W6 267 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 TMC8Q8IU68 726 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 DCP1BQ8IZD4 617 aaKnown RBP12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 GUF1Q8N442 669 aaKnown RBP12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 MCRS1Q96EZ8 462 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 PKMYT1Q99640 499 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 ACBD6Q9BR61 282 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 TMLHEQ9NVH6 421 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 DDX43Q9NXZ2 648 aaKnown RBP12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 GDE1Q9NZC3 331 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 MAPK8IP1Q9UQF2 711 aa12.48□□□□□ -0.41
SH3RF1-205ENST00000511421 LRRIQ3A6PVS8 624 aaPredicted RBP12.47□□□□□ -0.41
SH3RF1-205ENST00000511421 ZNF197O14709 1029 aa12.47□□□□□ -0.41
SH3RF1-205ENST00000511421 HCRTO43612 131 aa12.47□□□□□ -0.41
SH3RF1-205ENST00000511421 CALUO43852 315 aaPredicted RBP12.47□□□□□ -0.41
SH3RF1-205ENST00000511421 KIF20AO95235 890 aa12.47□□□□□ -0.41
SH3RF1-205ENST00000511421 ALDH1A3P47895 512 aa12.47□□□□□ -0.41
SH3RF1-205ENST00000511421 TUFMP49411 452 aaKnown RBP12.47□□□□□ -0.41
SH3RF1-205ENST00000511421 EPHB3P54753 998 aa12.47□□□□□ -0.41
SH3RF1-205ENST00000511421 TSPY1Q01534 308 aa12.47□□□□□ -0.41
SH3RF1-205ENST00000511421 NFIL3Q16649 462 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms