RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 A0A1B0GTH6 734 aa31.7■■■□□ 2.67
LIMCH1-211ENST00000509638 LILRB3O75022 631 aa31.7■■■□□ 2.67
LIMCH1-211ENST00000509638 OAZ2O95190 189 aa31.7■■■□□ 2.67
LIMCH1-211ENST00000509638 APBA1Q02410 837 aa31.7■■■□□ 2.67
LIMCH1-211ENST00000509638 MRPL58Q14197 206 aaKnown RBP31.7■■■□□ 2.67
LIMCH1-211ENST00000509638 CTXN3Q4LDR2 81 aa31.7■■■□□ 2.67
LIMCH1-211ENST00000509638 RTN4Q9NQC3 1192 aaKnown RBP31.7■■■□□ 2.67
LIMCH1-211ENST00000509638 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP31.7■■■□□ 2.67
LIMCH1-211ENST00000509638 H7C4K7 107 aa31.69■■■□□ 2.66
LIMCH1-211ENST00000509638 TACC1O75410 805 aa31.69■■■□□ 2.66
LIMCH1-211ENST00000509638 CDH8P55286 799 aa31.69■■■□□ 2.66
LIMCH1-211ENST00000509638 CREMQ03060 361 aa31.69■■■□□ 2.66
LIMCH1-211ENST00000509638 OSTM1Q86WC4 334 aa31.69■■■□□ 2.66
LIMCH1-211ENST00000509638 ARHGEF19Q8IW93 802 aa31.69■■■□□ 2.66
LIMCH1-211ENST00000509638 PPM1KQ8N3J5 372 aa31.69■■■□□ 2.66
LIMCH1-211ENST00000509638 NAP1L5Q96NT1 182 aaPredicted RBP31.69■■■□□ 2.66
LIMCH1-211ENST00000509638 PLXNA3P51805 1871 aa31.69■■■□□ 2.66
LIMCH1-211ENST00000509638 WEE2P0C1S8 567 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 IGFBP4P22692 258 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 KCNMA1Q12791 1236 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 CUL2Q13617 745 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 SPATA18Q8TC71 538 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 FAXDC2Q96IV6 333 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 GUCD1Q96NT3 240 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 CNPP09543 421 aaKnown RBP31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 WARSP23381 471 aaKnown RBP31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 PHLDB3Q6NSJ2 640 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 RSPO2Q6UXX9 243 aaPredicted RBP31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 ADGRD2Q7Z7M1 963 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 GLYCTKQ8IVS8 523 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 MYLIPQ8WY64 445 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 CDX2Q99626 313 aaPredicted RBP31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 RTP3Q9BQQ7 232 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 LSM14BQ9BX40 385 aaKnown RBP31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 RXFP1Q9HBX9 757 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 DDX43Q9NXZ2 648 aaKnown RBP31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 LMCD1Q9NZU5 365 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 APEX2Q9UBZ4 518 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 FBXL5Q9UKA1 691 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 BACE2Q9Y5Z0 518 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 MTCH2Q9Y6C9 303 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 CDY1Q9Y6F8 540 aa31.68■■■□□ 2.66
LIMCH1-211ENST00000509638 GABRDO14764 452 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 TEX28O15482 410 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 TEX33O43247 280 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 HCRTO43612 131 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 TBXAS1P24557 533 aaPredicted RBP31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 SYCP1Q15431 976 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 RRAGAQ7L523 313 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 OR10T2Q8NGX3 314 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 EMILIN2Q9BXX0 1053 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 SNX25Q9H3E2 840 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 CYP3A43Q9HB55 503 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 SIX2Q9NPC8 291 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 IFNKQ9P0W0 207 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 FNIP2Q9P278 1114 aa31.67■■■□□ 2.66
LIMCH1-211ENST00000509638 ADAM12O43184 909 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 TBC1D4O60343 1298 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 CD58P19256 250 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 LHX1P48742 406 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 NDUFV1P49821 464 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 KLK7P49862 253 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 UBASH3AP57075 661 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 THEM5Q8N1Q8 247 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 OR6B3Q8NGW1 331 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 KAT5Q92993 513 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 CLSTN3Q9BQT9 956 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 NSUN3Q9H649 340 aaKnown RBP31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 SIK3Q9Y2K2 1263 aa31.66■■■□□ 2.66
LIMCH1-211ENST00000509638 GCNT1Q02742 428 aa31.65■■■□□ 2.66
LIMCH1-211ENST00000509638 GJB7Q6PEY0 223 aa31.65■■■□□ 2.66
LIMCH1-211ENST00000509638 ERGIC2Q96RQ1 377 aa31.65■■■□□ 2.66
LIMCH1-211ENST00000509638 MTMR10Q9NXD2 777 aa31.65■■■□□ 2.66
LIMCH1-211ENST00000509638 HMGXB4Q9UGU5 601 aa31.65■■■□□ 2.66
LIMCH1-211ENST00000509638 NME7Q9Y5B8 376 aa31.65■■■□□ 2.66
LIMCH1-211ENST00000509638 OR6C75A6NL08 312 aa31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 ADH1AP07327 375 aa31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 POU3F3P20264 500 aaPredicted RBP31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 ACAT1P24752 427 aaKnown RBP31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 INCA1Q0VD86 236 aa31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 PTPN21Q16825 1174 aa31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 SLC8B1Q6J4K2 584 aa31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 KLHL5Q96PQ7 755 aa31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 CISHQ9NSE2 258 aa31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 STXBP5LQ9Y2K9 1186 aa31.64■■■□□ 2.66
LIMCH1-211ENST00000509638 FAM163BP0C2L3 166 aa31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 LMO2P25791 158 aa31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 OR1D2P34982 312 aa31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 GNL1P36915 607 aaPredicted RBP31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 DPY19L2P1Q6NXN4 242 aa31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 RBM23Q86U06 439 aaKnown RBP31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 PPP2R3CQ969Q6 453 aa31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 PCMTD1Q96MG8 357 aaPredicted RBP31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 TMEM209Q96SK2 561 aa31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 OXCT2Q9BYC2 517 aaPredicted RBP31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 UBE2TQ9NPD8 197 aaPredicted RBP31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 FAM207AQ9NSI2 230 aaPredicted RBP31.64■■■□□ 2.65
LIMCH1-211ENST00000509638 PER2O15055 1255 aa31.63■■■□□ 2.65
LIMCH1-211ENST00000509638 OR4Q2P0C623 313 aa31.63■■■□□ 2.65
LIMCH1-211ENST00000509638 CPB1P15086 417 aa31.63■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms