RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 UMODL1Q5DID0 1318 aa11.71□□□□□ -0.54
SH3RF1-203ENST00000508685 H3BRB1 525 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ZC3H11AO75152 810 aaKnown RBP eCLIP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 DNAJC8O75937 253 aaPredicted RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 VTNP04004 478 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 COMTP21964 271 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 RWDD2BP57060 319 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 CAV1Q03135 178 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 MCL1Q07820 350 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 CALCOCO2Q13137 446 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ZNF211Q13398 564 aaPredicted RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 TFDP1Q14186 410 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 DUSP28Q4G0W2 176 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 PRAMEF19Q5SWL8 479 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ATF7IP2Q5U623 682 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 TSHZ1Q6ZSZ6 1077 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 SLC13A5Q86YT5 568 aaPredicted RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 BRSK2Q8IWQ3 736 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 THNSL1Q8IYQ7 743 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 FBXO25Q8TCJ0 367 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 PPP1R13LQ8WUF5 828 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 DDX1Q92499 740 aaKnown RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 LENG1Q96BZ8 264 aaPredicted RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ZIC5Q96T25 663 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 MTMR12Q9C0I1 747 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 EPB41L4BQ9H329 900 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ABHD16BQ9H3Z7 469 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 FZD8Q9H461 694 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 TUT1Q9H6E5 874 aaKnown RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 LRRC19Q9H756 370 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 WHRNQ9P202 907 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 DOCK3Q8IZD9 2030 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 A0A087WZ62 844 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ACKR2O00590 384 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 OGTO15294 1046 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 MMP3P08254 477 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 PROZP22891 400 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 CDR2Q01850 454 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 SLC29A2Q14542 456 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 TMEM132AQ24JP5 1023 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ZNF568Q3ZCX4 644 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 TNFAIP8L3Q5GJ75 292 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 WDR44Q5JSH3 913 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ZNF484Q5JVG2 852 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 EEF1DP3Q658K8 133 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 MPZL3Q6UWV2 235 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 CEP128Q6ZU80 1094 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ENOSF1Q7L5Y1 443 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 TMEM192Q8IY95 271 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 CCDC105Q8IYK2 499 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 RNF25Q96BH1 459 aaPredicted RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 ZNF317Q96PQ6 595 aaPredicted RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 FDXACB1Q9BRP7 624 aaPredicted RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 PTPRHQ9HD43 1115 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 HOMER3Q9NSC5 361 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 WBP1LQ9NX94 342 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 FLRT1Q9NZU1 646 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 SAMD15Q9P1V8 674 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 CPSF3Q9UKF6 684 aaKnown RBP11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 AKT3Q9Y243 479 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 NUB1Q9Y5A7 615 aa11.7□□□□□ -0.54
SH3RF1-203ENST00000508685 CCT8L1PA6NM43 557 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 RASGRF2O14827 1237 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 SPOPO43791 374 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 ECEL1O95672 775 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 CST3P01034 146 aaPredicted RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 HSPA1AP0DMV8 641 aaKnown RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 HSPA1BP0DMV9 641 aaKnown RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 CHN1P15882 459 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 ITIH2P19823 946 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 RPL21P46778 160 aaKnown RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 NOP14P78316 857 aaKnown RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 XRCC4Q13426 336 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 NCOA4Q13772 614 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 MESDQ14696 234 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 MARCH8Q5T0T0 291 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 PIGWQ7Z7B1 504 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 LINC01465Q8N7H1 131 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 OR6J1Q8NGC5 347 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 ZNF564Q8TBZ8 553 aaPredicted RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 GRK7Q8WTQ7 553 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 CCT6BQ92526 530 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 C18orf8Q96DM3 657 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 TRIM11Q96F44 468 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 PLCD4Q9BRC7 762 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 OSBPL7Q9BZF2 842 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 SLC40A1Q9NP59 571 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 INTS9Q9NV88 658 aaKnown RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 SLC15A5A6NIM6 579 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 RIPK2O43353 540 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 ACO1P21399 889 aaKnown RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 SLC1A1P43005 524 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 CUL2Q13617 745 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 TAF1CQ15572 869 aaPredicted RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 QPCTQ16769 361 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 MTHFD1LQ6UB35 978 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 ADAT2Q7Z6V5 191 aaKnown RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 WDR49Q8IV35 697 aa11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 REM2Q8IYK8 340 aaPredicted RBP11.69□□□□□ -0.54
SH3RF1-203ENST00000508685 TMEM130Q8N3G9 435 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms