RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PPM1NQ8N819 430 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 SSH1Q8WYL5 1049 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 RFKQ969G6 155 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 HDAC10Q969S8 669 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 SLC2A13Q96QE2 648 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 OSBPL9Q96SU4 736 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 ACTRT3Q9BYD9 372 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 SERTAD4Q9NUC0 356 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 ELOVL5Q9NYP7 299 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 SERGEFQ9UGK8 458 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 MYMKA6NI61 221 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 SMIM22K7EJ46 135 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 INSIG1O15503 277 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 RPLP2P05387 115 aaKnown RBP3.89□□□□□ -1.79
NUP54-208ENST00000508604 SBK3P0C264 359 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 SLC16A1P53985 500 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 GYS2P54840 703 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 FOXG1P55316 489 aaPredicted RBP3.89□□□□□ -1.79
NUP54-208ENST00000508604 STAT4Q14765 748 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 RAB39AQ14964 217 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 TBCCQ15814 346 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 PPP4R3AQ6IN85 833 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 SLC30A10Q6XR72 485 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 TECPR1Q7Z6L1 1165 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 TMIEQ8NEW7 156 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 CHAC2Q8WUX2 184 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 MAN1C1Q9NR34 630 aa3.89□□□□□ -1.79
NUP54-208ENST00000508604 TUBA8Q9NY65 449 aaPredicted RBP3.89□□□□□ -1.79
NUP54-208ENST00000508604 VSX1Q9NZR4 365 aaPredicted RBP3.89□□□□□ -1.79
NUP54-208ENST00000508604 H3BNC9 293 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 QSOX1O00391 747 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 SGTAO43765 313 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 NTN1O95631 604 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 ITGALP20701 1170 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 AGXTP21549 392 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 CCKBRP32239 447 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 WASP42768 502 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 AWAT2Q6E213 333 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 ANKRD16Q6P6B7 361 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 ZNF66Q6ZN08 573 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 TMPRSS9Q7Z410 1059 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 JAZF1Q86VZ6 243 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 POC1BQ8TC44 478 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 RAB24Q969Q5 203 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 QTRT1Q9BXR0 403 aaKnown RBP3.88□□□□□ -1.79
NUP54-208ENST00000508604 ADGRE3Q9BY15 652 aa3.88□□□□□ -1.79
NUP54-208ENST00000508604 ENPP3O14638 875 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 ONECUT2O95948 504 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 GNAI3P08754 354 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 GNAI1P63096 354 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 TARDBPQ13148 414 aaKnown RBP eCLIP3.87□□□□□ -1.79
NUP54-208ENST00000508604 CLUL1Q15846 466 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 ZNF260Q3ZCT1 412 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 SUPT20HL1Q3ZLR7 823 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 CEP78Q5JTW2 689 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 AARS2Q5JTZ9 985 aaKnown RBP3.87□□□□□ -1.79
NUP54-208ENST00000508604 RUSC1-AS1Q66K80 236 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 SLC2A7Q6PXP3 512 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 CNGA4Q8IV77 575 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 IFI44Q8TCB0 444 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 FBXO41Q8TF61 875 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 SH2D3AQ9BRG2 576 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 AMBRA1Q9C0C7 1298 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 SIK2Q9H0K1 926 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 VPS16Q9H269 839 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 GNL3LQ9NVN8 582 aaKnown RBP3.87□□□□□ -1.79
NUP54-208ENST00000508604 PCDHA13Q9Y5I0 950 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 KCNU1A8MYU2 1149 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 DNAJB5O75953 348 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 NR4A2P43354 598 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 ZNF618Q5T7W0 954 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 PRSS3P2Q8NHM4 247 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 SPATA3Q8NHX4 192 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 SCAMP4Q969E2 229 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 FAM136AQ96C01 138 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 LRIG1Q96JA1 1093 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 PUS7Q96PZ0 661 aaKnown RBP3.87□□□□□ -1.79
NUP54-208ENST00000508604 TMEM79Q9BSE2 394 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 CNPPD1Q9BV87 410 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 ZNF277Q9NRM2 450 aaPredicted RBP3.87□□□□□ -1.79
NUP54-208ENST00000508604 SLC45A2Q9UMX9 530 aa3.87□□□□□ -1.79
NUP54-208ENST00000508604 PRRT4C9JH25 899 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 PRKD3O94806 890 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 TOP3BO95985 862 aaKnown RBP3.86□□□□□ -1.79
NUP54-208ENST00000508604 CHEK2O96017 543 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 CD6P30203 668 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 ZNF280AP59817 542 aaPredicted RBP3.86□□□□□ -1.79
NUP54-208ENST00000508604 RAPGEF1Q13905 1077 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 TRIP6Q15654 476 aaKnown RBP3.86□□□□□ -1.79
NUP54-208ENST00000508604 FLYWCH1Q4VC44 716 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 WDR53Q7Z5U6 358 aaPredicted RBP3.86□□□□□ -1.79
NUP54-208ENST00000508604 SPATS2Q86XZ4 545 aaKnown RBP3.86□□□□□ -1.79
NUP54-208ENST00000508604 PDSS2Q86YH6 399 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 CLPTM1LQ96KA5 538 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 PRSS22Q9GZN4 317 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 BRD9Q9H8M2 597 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 WWOXQ9NZC7 414 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 CALCOCO1Q9P1Z2 691 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 DKK3Q9UBP4 350 aa3.86□□□□□ -1.79
NUP54-208ENST00000508604 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms