RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 C1orf54Q8WWF1 131 aa12.7□□□□□ -0.38
NUP54-202ENST00000502850 CCT8L2Q96SF2 557 aa12.7□□□□□ -0.38
NUP54-202ENST00000502850 FRMD8P1Q9BZ68 369 aaPredicted RBP12.7□□□□□ -0.38
NUP54-202ENST00000502850 RPF1Q9H9Y2 349 aaKnown RBP12.7□□□□□ -0.38
NUP54-202ENST00000502850 CISHQ9NSE2 258 aa12.7□□□□□ -0.38
NUP54-202ENST00000502850 FAM169AQ9Y6X4 670 aa12.7□□□□□ -0.38
NUP54-202ENST00000502850 TMEM191CA6NGB0 347 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 ZBTB42B2RXF5 422 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 ABLIM1O14639 778 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 RASGRF2O14827 1237 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 TRAPPC3O43617 180 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 ARIH2O95376 493 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 RALAP11233 206 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 P4HA1P13674 534 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 MARK3P27448 753 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 RDXP35241 583 aaKnown RBP12.69□□□□□ -0.38
NUP54-202ENST00000502850 TNFSF9P41273 254 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 SSR1P43307 286 aaKnown RBP12.69□□□□□ -0.38
NUP54-202ENST00000502850 KCNJ1P48048 391 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 MYL6P60660 151 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 CCNA1P78396 465 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 TFAMQ00059 246 aaKnown RBP12.69□□□□□ -0.38
NUP54-202ENST00000502850 DRP2Q13474 957 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 LAMC2Q13753 1193 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 TTLL12Q14166 644 aaPredicted RBP12.69□□□□□ -0.38
NUP54-202ENST00000502850 FAM187BQ17R55 369 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 HSDL1Q3SXM5 330 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 CCDC62Q6P9F0 684 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 DCUN1D2Q6PH85 259 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 RHBDF2Q6PJF5 856 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 MOB2Q70IA6 237 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 EEPD1Q7L9B9 569 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 CPNE8Q86YQ8 564 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 CNKSR2Q8WXI2 1034 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 RNF25Q96BH1 459 aaPredicted RBP12.69□□□□□ -0.38
NUP54-202ENST00000502850 ELMO3Q96BJ8 720 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 PTPRHQ9HD43 1115 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 WDR35Q9P2L0 1181 aa12.69□□□□□ -0.38
NUP54-202ENST00000502850 INO80B-WBP1J3KQ70 363 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 CAND2O75155 1236 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 HOXC6P09630 235 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 TXNP10599 105 aaKnown RBP12.68□□□□□ -0.38
NUP54-202ENST00000502850 MCF2P10911 925 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 ATICP31939 592 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 ADCY8P40145 1251 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 GSCP56915 257 aaPredicted RBP12.68□□□□□ -0.38
NUP54-202ENST00000502850 LACTBP83111 547 aaPredicted RBP12.68□□□□□ -0.38
NUP54-202ENST00000502850 NFX1Q12986 1120 aaKnown RBP12.68□□□□□ -0.38
NUP54-202ENST00000502850 MKRN4PQ13434 485 aaPredicted RBP12.68□□□□□ -0.38
NUP54-202ENST00000502850 ZNF667Q5HYK9 610 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 POLNQ7Z5Q5 900 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 ERICH1Q86X53 443 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 IFNLR1Q8IU57 520 aaPredicted RBP12.68□□□□□ -0.38
NUP54-202ENST00000502850 RELL1Q8IUW5 271 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 LRRC71Q8N4P6 559 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 IPO4Q8TEX9 1081 aaKnown RBP12.68□□□□□ -0.38
NUP54-202ENST00000502850 FAM212AQ96EL1 285 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 FGD4Q96M96 766 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 NLRP4Q96MN2 994 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 SERPINB12Q96P63 405 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 TRIM7Q9C029 511 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 INO80BQ9C086 356 aaPredicted RBP12.68□□□□□ -0.38
NUP54-202ENST00000502850 LHX5Q9H2C1 402 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 CHST7Q9NS84 486 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 RBPJLQ9UBG7 517 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 ANAPC5Q9UJX4 755 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 USTQ9Y2C2 406 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 PLXNA1Q9UIW2 1896 aa12.68□□□□□ -0.38
NUP54-202ENST00000502850 UNCXA6NJT0 531 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 CALCAP01258 141 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 KRT1P04264 644 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 SHBGP04278 402 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 PGK2P07205 417 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 CD58P19256 250 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 FGFR4P22455 802 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 MMP13P45452 471 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 MBTD1Q05BQ5 628 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 SNX1Q13596 522 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 GPAT2Q6NUI2 795 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 EFCAB12Q6NXP0 572 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 CCDC25Q86WR0 208 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 RASAL3Q86YV0 1011 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 FBXO16Q8IX29 292 aaPredicted RBP12.67□□□□□ -0.38
NUP54-202ENST00000502850 REM2Q8IYK8 340 aaPredicted RBP12.67□□□□□ -0.38
NUP54-202ENST00000502850 FNIP1Q8TF40 1166 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 P3H4Q92791 437 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 OPTNQ96CV9 577 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 FAM84AQ96KN4 292 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 CCDC77Q9BR77 488 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 MIS12Q9H081 205 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 CDC42EP4Q9H3Q1 356 aaKnown RBP12.67□□□□□ -0.38
NUP54-202ENST00000502850 SEMA4AQ9H3S1 761 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 ASB7Q9H672 318 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 CYP3A43Q9HB55 503 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 VTA1Q9NP79 307 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 PPANQ9NQ55 473 aaKnown RBP12.67□□□□□ -0.38
NUP54-202ENST00000502850 EFR3BQ9Y2G0 817 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 PLXNB2O15031 1838 aa12.67□□□□□ -0.38
NUP54-202ENST00000502850 C5orf60A6NFR6 353 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TCEA3O75764 348 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms