RNA–Protein interactions for RNA: ENST00000502394.1

MATR3-231, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 589 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-231	ENST00000502394	EPHB4	P54760	987 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	CDH8	P55286	799 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	YWHAE	P62258	255 aa	Known RBP	12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	TNNC1	P63316	161 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	DEFB103A	P81534	67 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	PTK2	Q05397	1052 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	TDRD12	Q587J7	1177 aa	Known RBP	12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	DPH6	Q7L8W6	267 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	ZSCAN30	Q86W11	494 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	RBBP8NL	Q8NC74	664 aa	Predicted RBP	12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	SLC30A5	Q8TAD4	765 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	ZNF689	Q96CS4	500 aa	Predicted RBP	12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	KCNK17	Q96T54	332 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	NRDE2	Q9H7Z3	1164 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	LRFN2	Q9ULH4	789 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	REXO2	Q9Y3B8	237 aa	Known RBP	12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	R3HCC1	Q9Y3T6	440 aa	Known RBP	12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	NME7	Q9Y5B8	376 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	PCDHB4	Q9Y5E5	795 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	SNX9	Q9Y5X1	595 aa		12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	EPN1	Q9Y6I3	576 aa	Predicted RBP	12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	12.99	□□□□□ -0.33
MATR3-231	ENST00000502394	EIF3CL	B5ME19	914 aa	Known RBP	12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	DDX3X	O00571	662 aa	Known RBP eCLIP	12.98	□□□□□ -0.33	2e-7	■■■■■ 31.5
MATR3-231	ENST00000502394	CYP11B1	P15538	503 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	CHRNB2	P17787	502 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	KIF11	P52732	1056 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	ARID5A	Q03989	594 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	FPGS	Q05932	587 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	SOWAHA	Q2M3V2	549 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	TMEM240	Q5SV17	173 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	DCLRE1A	Q6PJP8	1040 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	ADGRD1	Q6QNK2	874 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	TMEM270	Q6UE05	265 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	TOGARAM2	Q6ZUX3	1019 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	NOP9	Q86U38	636 aa	Known RBP	12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	SLC47A2	Q86VL8	602 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	TTC39C	Q8N584	583 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	TOP6BL	Q8N6T0	577 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	LNX1	Q8TBB1	728 aa	Predicted RBP	12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	KBTBD7	Q8WVZ9	684 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	TWNK	Q96RR1	684 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	EIF3C	Q99613	913 aa	Known RBP	12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	MRPL45	Q9BRJ2	306 aa	Known RBP	12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	MRPL9	Q9BYD2	267 aa	Known RBP	12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	ACP6	Q9NPH0	428 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	PRKAG2	Q9UGJ0	569 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	HMGXB4	Q9UGU5	601 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	BARX2	Q9UMQ3	279 aa	Predicted RBP	12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	L1RE1	Q9UN81	338 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	ADGRG1	Q9Y653	693 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394	PTPRS	Q13332	1948 aa		12.98	□□□□□ -0.33
MATR3-231	ENST00000502394		M0QZQ0	153 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	GABRD	O14764	452 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	HR	O43593	1189 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	AMH	P03971	560 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	PAEP	P09466	180 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	KRT5	P13647	590 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	CD58	P19256	250 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	WARS	P23381	471 aa	Known RBP	12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	CYLC1	P35663	651 aa	Predicted RBP	12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	RAD23B	P54727	409 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	BPIFB4	P59827	614 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	FMO1	Q01740	532 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	BMS1	Q14692	1282 aa	Known RBP	12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	TIGD5	Q53EQ6	642 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	ZNF365	Q70YC5	407 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	OSTM1	Q86WC4	334 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	ZNF677	Q86XU0	584 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	ABI1	Q8IZP0	508 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	SLC4A11	Q8NBS3	891 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	SPATA18	Q8TC71	538 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	SLC20A1	Q8WUM9	679 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	SENP8	Q96LD8	212 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	CCDC42	Q96M95	316 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	AGPAT1	Q99943	283 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	ZSWIM1	Q9BR11	485 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	TMEM175	Q9BSA9	504 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	ELOVL4	Q9GZR5	314 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	HCST	Q9UBK5	93 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	DNAJB4	Q9UDY4	337 aa		12.97	□□□□□ -0.33
MATR3-231	ENST00000502394	ATP8B3	O60423	1300 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394		A0A087X0T9	212 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	TBKBP1	A7MCY6	615 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394		F8W810	466 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	KIF4A	O95239	1232 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	CALCA	P01258	141 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	FGB	P02675	491 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	CYP11A1	P05108	521 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	ITGB1	P05556	798 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	FAM228B	P0C875	321 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	USP8	P40818	1118 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	PDE6C	P51160	858 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	CDR2	Q01850	454 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	SLC18A3	Q16572	532 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	PSRC1	Q6PGN9	363 aa	Predicted RBP	12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	UNC93A	Q86WB7	457 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	LRRC43	Q8N309	656 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	PDCL2	Q8N4E4	241 aa		12.96	□□□□□ -0.33
MATR3-231	ENST00000502394	ACRBP	Q8NEB7	543 aa		12.96	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms