RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 GALNTL6Q49A17 601 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PREPLQ4J6C6 727 aaPredicted RBP17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ATP13A4Q4VNC1 1196 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 WLSQ5T9L3 541 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ZNF365Q70YC5 407 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 RBBP8NLQ8NC74 664 aaPredicted RBP17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 BBOF1Q8ND07 529 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 RBAKQ9NYW8 714 aaPredicted RBP17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ADAMTS5Q9UNA0 930 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 AFG3L2Q9Y4W6 797 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CNTNAP2Q9UHC6 1331 aa17.03■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SUPT20HL2P0C7V6 817 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ABCD1P33897 745 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GJC1P36383 396 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 BACE1P56817 501 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 C1QBPQ07021 282 aaKnown RBP17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 STRN3Q13033 797 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 NUGGCQ68CJ6 796 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GADL1Q6ZQY3 521 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SEPT14Q6ZU15 432 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SAPCD2Q86UD0 394 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GLIS1Q8NBF1 620 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 OR5B17Q8NGF7 314 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GDAP1Q8TB36 358 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 FEZF2Q8TBJ5 459 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 TBK1Q9UHD2 729 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 GGT7Q9UJ14 662 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ZNF157P51786 506 aaPredicted RBP17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 LDLRAD1Q5T700 205 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CGB2Q6NT52 195 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 MIS18BP1Q6P0N0 1132 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 UBR7Q8N806 425 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CCDC63Q8NA47 563 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CGRRF1Q99675 332 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PORCNQ9H237 461 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 KLHL11Q9NVR0 708 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 CYP39A1Q9NYL5 469 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 PRKAG3Q9UGI9 489 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 SCINQ9Y6U3 715 aa17.02■□□□□ 0.32
MSH5-SAPCD1-208ENST00000498473 ADGRA2Q96PE1 1338 aa17.02■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 DNAH12Q6ZR08 3092 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CDH16O75309 829 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ARL2P36404 184 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 POLGP54098 1239 aaPredicted RBP17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RPL7AP62424 266 aaKnown RBP17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ZNF252P-AS1Q0IIN9 211 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NFX1Q12986 1120 aaKnown RBP17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 STAT4Q14765 748 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TMEM132BQ14DG7 1078 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ZCCHC9Q8N567 271 aaKnown RBP17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MAML1Q92585 1016 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TARS2Q9BW92 718 aaKnown RBP17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 DHX33Q9H6R0 707 aaKnown RBP17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 A0A0B4J269 797 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 PI4K2BG5E9Z4 385 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 LIASO43766 372 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ATP6V1G2O95670 118 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 KRT10P13645 584 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 GCAP28676 217 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MAGEA4P43358 317 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ZNF132P52740 706 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NCALDP61601 193 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NOP14P78316 857 aaKnown RBP17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 P3H1Q32P28 736 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CYP4F22Q6NT55 531 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CDHR1Q96JP9 859 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SLITRK1Q96PX8 696 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 PARVAQ9NVD7 372 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 DNPEPQ9ULA0 475 aa17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MAFBQ9Y5Q3 323 aaPredicted RBP17.01■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TCRBV5S1A1TA0A578 114 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TMEM191CA6NGB0 347 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 K7ERI5 159 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SUN1O94901 812 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ABHD2P08910 425 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TMEM191BP0C7N4 346 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MMP8P22894 467 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TBXAS1P24557 533 aaPredicted RBP17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SSR1P43307 286 aaKnown RBP17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NAMPTP43490 491 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 OAZ1P54368 228 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CCDC142Q17RM4 750 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SLFN12LQ6IEE8 588 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SRRM1Q8IYB3 904 aaKnown RBP17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ZNF606Q8WXB4 792 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RBM15Q96T37 977 aaKnown RBP eCLIP17■□□□□ 0.314e-7■■■□□ 15.4
MSH5-SAPCD1-208ENST00000498473 MSTO1Q9BUK6 570 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 FBXO40Q9UH90 709 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 IP6K2Q9UHH9 426 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ACTL7BQ9Y614 415 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 KLHL33A6NCF5 533 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ATG7O95352 703 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ZSCAN5DPP0CG00 497 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SEZ6Q53EL9 994 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MFSD7Q6UXD7 560 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SPATA21Q7Z572 469 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TBC1D1Q86TI0 1168 aaPredicted RBP17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RCOR2Q8IZ40 523 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MAGEB18Q96M61 343 aa17■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 FOXP3Q9BZS1 431 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms