RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.99□□□□□ -0.97
SF3A1-210ENST00000498259 HYOU1Q9Y4L1 999 aa8.99□□□□□ -0.97
SF3A1-210ENST00000498259 PCDHB7Q9Y5E2 793 aa8.99□□□□□ -0.97
SF3A1-210ENST00000498259 NCANO14594 1321 aa8.99□□□□□ -0.97
SF3A1-210ENST00000498259 MYO1FO00160 1098 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 INPPL1O15357 1258 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 BUB1O43683 1085 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 PQBP1O60828 265 aaKnown RBP8.98□□□□□ -0.97
SF3A1-210ENST00000498259 EFCAB14O75071 495 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 PALMO75781 387 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 MTA2O94776 668 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 CYP1A1P04798 512 aaPredicted RBP8.98□□□□□ -0.97
SF3A1-210ENST00000498259 CYP1A2P05177 515 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 SETSIPP0DME0 302 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 UNGP13051 313 aaPredicted RBP8.98□□□□□ -0.97
SF3A1-210ENST00000498259 CHRNB2P17787 502 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 MLH1P40692 756 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 CETN2P41208 172 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 GJA8P48165 433 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 LILRA4P59901 499 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 FAM189BP81408 668 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 TUSC3Q13454 348 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 MTFR1Q15390 333 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 GLRA4Q5JXX5 417 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 C11orf63Q6NUN7 778 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 DSTYKQ6XUX3 929 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 SCARA5Q6ZMJ2 495 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 ERICH1Q86X53 443 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 UBR7Q8N806 425 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 RNF169Q8NCN4 708 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 OR6B3Q8NGW1 331 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.98□□□□□ -0.97
SF3A1-210ENST00000498259 CXorf38Q8TB03 319 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 WNT8BQ93098 351 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 ZNF653Q96CK0 615 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 PBKQ96KB5 322 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 GAD1Q99259 594 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 NCAPGQ9BPX3 1015 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 MRPL9Q9BYD2 267 aaKnown RBP8.98□□□□□ -0.97
SF3A1-210ENST00000498259 IRX2Q9BZI1 471 aaPredicted RBP8.98□□□□□ -0.97
SF3A1-210ENST00000498259 THAP2Q9H0W7 228 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 HIPK3Q9H422 1215 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 TUBGCP4Q9UGJ1 667 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 MRFAP1Q9Y605 127 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 DUSP10Q9Y6W6 482 aa8.98□□□□□ -0.97
SF3A1-210ENST00000498259 CTAGE15A4D2H0 777 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 RCCD1A6NED2 376 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 EFCAB8A8MWE9 144 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 A8MXQ7 604 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 PODXLO00592 558 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 MYCP01106 439 aaPredicted RBP8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CTAGE8P0CG41 777 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 ODC1P11926 461 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 MMP8P22894 467 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 MCM3P25205 808 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 PCSK1P29120 753 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CDH5P33151 784 aaPredicted RBP8.97□□□□□ -0.97
SF3A1-210ENST00000498259 NDST1P52848 882 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 RAD23BP54727 409 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 RNASELQ05823 741 aaKnown RBP8.97□□□□□ -0.97
SF3A1-210ENST00000498259 IKBKEQ14164 716 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 MAPRE1Q15691 268 aaKnown RBP8.97□□□□□ -0.97
SF3A1-210ENST00000498259 PPP2R5EQ16537 467 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CFAP221Q4G0U5 840 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 ZNF394Q53GI3 561 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 PLEKHG4Q58EX7 1191 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 NAA35Q5VZE5 725 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 DCLRE1AQ6PJP8 1040 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 NECAB2Q7Z6G3 386 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CTAGE6Q86UF2 777 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 ZDHHC17Q8IUH5 632 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 GPIHBP1Q8IV16 184 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CTAGE4Q8IX94 777 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 MCOLN2Q8IZK6 566 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CRYBG2Q8N1P7 616 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 THEM5Q8N1Q8 247 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 DNAJC5GQ8N7S2 189 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 TPCN2Q8NHX9 752 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 STK32AQ8WU08 396 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 UBXN4Q92575 508 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 C18orf25Q96B23 403 aaPredicted RBP8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CYFIP2Q96F07 1278 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 WNT8AQ9H1J5 351 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 C11orf49Q9H6J7 331 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 SMYD3Q9H7B4 428 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CYLDQ9NQC7 956 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 TRIM10Q9UDY6 481 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CNOT8Q9UFF9 292 aaKnown RBP8.97□□□□□ -0.97
SF3A1-210ENST00000498259 SNX12Q9UMY4 172 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 POLIQ9UNA4 740 aa8.97□□□□□ -0.97
SF3A1-210ENST00000498259 CCDC66A2RUB6 948 aa8.96□□□□□ -0.98
SF3A1-210ENST00000498259 GRID2IPA4D2P6 1211 aa8.96□□□□□ -0.98
SF3A1-210ENST00000498259 C9IYK1 514 aa8.96□□□□□ -0.98
SF3A1-210ENST00000498259 CYB561D2O14569 222 aa8.96□□□□□ -0.98
SF3A1-210ENST00000498259 PTGESO14684 152 aa8.96□□□□□ -0.98
SF3A1-210ENST00000498259 RIOK3O14730 519 aaKnown RBP8.96□□□□□ -0.98
SF3A1-210ENST00000498259 MEFVO15553 781 aaPredicted RBP8.96□□□□□ -0.98
SF3A1-210ENST00000498259 B3GAT3O94766 335 aa8.96□□□□□ -0.98
SF3A1-210ENST00000498259 PFKMP08237 780 aa8.96□□□□□ -0.98
SF3A1-210ENST00000498259 HSPA8P11142 646 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms