RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 SLC47A2Q86VL8 602 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 UNC93AQ86WB7 457 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 CCDC170Q8IYT3 715 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 TMEM86AQ8N2M4 240 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 PHOSPHO2Q8TCD6 241 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 WHAMMQ8TF30 809 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 SLC20A1Q8WUM9 679 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 SUSD3Q96L08 255 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 CCDC42Q96M95 316 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 SYT11Q9BT88 431 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 COLEC11Q9BWP8 271 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 ELOVL4Q9GZR5 314 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 ACP6Q9NPH0 428 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 MARCH5Q9NX47 278 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 ADAM28Q9UKQ2 775 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 FAN1Q9Y2M0 1017 aa12.17□□□□□ -0.46
MCF2L-231ENST00000494043 I3L4J1 428 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 TADA2AO75478 443 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 CALCAP01258 141 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 CYP11A1P05108 521 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 PAEPP09466 180 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 ATP2A2P16615 1042 aaKnown RBP12.16□□□□□ -0.46
MCF2L-231ENST00000494043 GNA15P30679 374 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 CYLC1P35663 651 aaPredicted RBP12.16□□□□□ -0.46
MCF2L-231ENST00000494043 KIF11P52732 1056 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 RAD23BP54727 409 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 ASTE1Q2TB18 679 aaPredicted RBP12.16□□□□□ -0.46
MCF2L-231ENST00000494043 ZNF394Q53GI3 561 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 WSCD1Q658N2 575 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 VPS36Q86VN1 386 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 OSTM1Q86WC4 334 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 ZNF677Q86XU0 584 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 HERC6Q8IVU3 1022 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 SLC4A11Q8NBS3 891 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 OR6B3Q8NGW1 331 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 OLIG1Q8TAK6 271 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 SPATA18Q8TC71 538 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 DDX1Q92499 740 aaKnown RBP12.16□□□□□ -0.46
MCF2L-231ENST00000494043 TWNKQ96RR1 684 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 AGPAT1Q99943 283 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 NT5C1AQ9BXI3 368 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 SNX25Q9H3E2 840 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 DEF6Q9H4E7 631 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 DSEQ9UL01 958 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 PYCARDQ9ULZ3 195 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 PCDHB8Q9UN66 801 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 NME7Q9Y5B8 376 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 MRPL42Q9Y6G3 142 aaKnown RBP12.16□□□□□ -0.46
MCF2L-231ENST00000494043 TSC2P49815 1807 aa12.16□□□□□ -0.46
MCF2L-231ENST00000494043 SF3B1O75533 1304 aaKnown RBP eCLIP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 CARNS1A5YM72 827 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 GABRDO14764 452 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 TRAPPC3O43617 180 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 AKR1B10O60218 316 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 NDUFA10O95299 355 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 LAG3P18627 525 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 TYMPP19971 482 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 GNL1P36915 607 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 PBX3P40426 434 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 LHX1P48742 406 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 ALDH7A1P49419 539 aaKnown RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 CDR2Q01850 454 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 ORC1Q13415 861 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 BMS1Q14692 1282 aaKnown RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 SPOUT1Q5T280 376 aaKnown RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 TAF3Q5VWG9 929 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 TOGARAM2Q6ZUX3 1019 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 TMEM173Q86WV6 379 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 METTL23Q86XA0 190 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 SP7Q8TDD2 431 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 BCL7CQ8WUZ0 217 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 TMEM176AQ96HP8 235 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 ZNF558Q96NG5 402 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 ZBED2Q9BTP6 218 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 SPTLC3Q9NUV7 552 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 PUF60Q9UHX1 559 aaKnown RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 STXBP5LQ9Y2K9 1186 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 ZKSCAN5Q9Y2L8 839 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 INSL6Q9Y581 213 aa12.15□□□□□ -0.46
MCF2L-231ENST00000494043 TIMM13Q9Y5L4 95 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 EPN1Q9Y6I3 576 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-231ENST00000494043 A8MXQ7 604 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 EIF3CLB5ME19 914 aaKnown RBP12.14□□□□□ -0.47
MCF2L-231ENST00000494043 NT5C1B-RDH14C9J2C7 533 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 DDX3XO00571 662 aaKnown RBP eCLIP12.14□□□□□ -0.47
MCF2L-231ENST00000494043 SYN3O14994 580 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 THAP12O43422 761 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 LCA5LO95447 670 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 MMEP08473 750 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 CD19P15391 556 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 CHRNB2P17787 502 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 BRD2P25440 801 aaKnown RBP12.14□□□□□ -0.47
MCF2L-231ENST00000494043 FMO1Q01740 532 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 ELAVL2Q12926 359 aaKnown RBP12.14□□□□□ -0.47
MCF2L-231ENST00000494043 SLC18A3Q16572 532 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 C9orf50Q5SZB4 431 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 FUT10Q6P4F1 479 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 KCNT2Q6UVM3 1135 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 ACOT1Q86TX2 421 aa12.14□□□□□ -0.47
MCF2L-231ENST00000494043 GLYCTKQ8IVS8 523 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms