RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PARP2Q9UGN5 583 aa22.39■■□□□ 1.17
CCDC88B-208ENST00000492980 ATP8A1Q9Y2Q0 1164 aa22.39■■□□□ 1.17
CCDC88B-208ENST00000492980 SKOR1P84550 965 aa22.38■■□□□ 1.17
CCDC88B-208ENST00000492980 ZNF252P-AS1Q0IIN9 211 aa22.38■■□□□ 1.17
CCDC88B-208ENST00000492980 ZSCAN26Q16670 478 aa22.38■■□□□ 1.17
CCDC88B-208ENST00000492980 DGKDQ16760 1214 aa22.38■■□□□ 1.17
CCDC88B-208ENST00000492980 KYAT1Q16773 422 aa22.38■■□□□ 1.17
CCDC88B-208ENST00000492980 DENND1BQ6P3S1 775 aa22.38■■□□□ 1.17
CCDC88B-208ENST00000492980 KIAA0319LQ8IZA0 1049 aa22.38■■□□□ 1.17
CCDC88B-208ENST00000492980 HMGB1P1B2RPK0 211 aaPredicted RBP22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 CELF2O95319 508 aaKnown RBP22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 RALAP11233 206 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 RAD23BP54727 409 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 CDH8P55286 799 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 KLF1Q13351 362 aaPredicted RBP22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 PPP1R15BQ5SWA1 713 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 IQSEC1Q6DN90 963 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 CCDC50Q8IVM0 306 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 SCLT1Q96NL6 688 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 MCEEQ96PE7 176 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 SMYD3Q9H7B4 428 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 CEP83Q9Y592 693 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 KAT6AQ92794 2004 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 SNX1Q13596 522 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 DNAJC21Q5F1R6 531 aaKnown RBP22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 ILDR2Q71H61 639 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 ERICH1Q86X53 443 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 EXD1Q8NHP7 514 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 ATG4AQ8WYN0 398 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 DCLK3Q9C098 648 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 VRTNQ9H8Y1 702 aa22.37■■□□□ 1.17
CCDC88B-208ENST00000492980 A0A1B0GUA9 196 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 GOLGA6L10A6NI86 522 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 SLC15A5A6NIM6 579 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 PAEPP09466 180 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 MYZAPP0CAP1 466 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 CD19P15391 556 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 ATICP31939 592 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 SSR1P43307 286 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 HNRNPH2P55795 449 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 LRRC31Q6UY01 552 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 ZNF410Q86VK4 478 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 ART4Q93070 314 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 CAPS2Q9BXY5 557 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 LHX5Q9H2C1 402 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 EPB41L4BQ9H329 900 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 R3HDM2Q9Y2K5 976 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 MED7O43513 233 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 GJC1P36383 396 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 OGDHQ02218 1023 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 KRT17Q04695 432 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 TMEM132DQ14C87 1099 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 PPP1R7Q15435 360 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 CYP4A22Q5TCH4 519 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 KDM7AQ6ZMT4 941 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 C3orf20Q8ND61 904 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 HEMGNQ9BXL5 484 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 LCMT1Q9UIC8 334 aa22.36■■□□□ 1.17
CCDC88B-208ENST00000492980 TCF4P15884 667 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 PMS2P54278 862 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 TAP1Q03518 808 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 EMC10Q5UCC4 262 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 ANKS1BQ7Z6G8 1248 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 SLC4A11Q8NBS3 891 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 TWNKQ96RR1 684 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 OSBPL8Q9BZF1 889 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 SETD4Q9NVD3 440 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 MTRF1LQ9UGC7 380 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 HMGXB4Q9UGU5 601 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 CITO14578 2027 aa22.35■■□□□ 1.17
CCDC88B-208ENST00000492980 POLR2BP30876 1174 aaKnown RBP22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 ORC1Q13415 861 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 PTPN20Q4JDL3 420 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 DCUN1D2Q6PH85 259 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 ACAP3Q96P50 834 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 FAM129AQ9BZQ8 928 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 ELOVL4Q9GZR5 314 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 CYTH4Q9UIA0 394 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 C2CD2Q9Y426 696 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 CILPO75339 1184 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 NR1D1P20393 614 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 FGFR4P22455 802 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 IRAK1P51617 712 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 RUFY4Q6ZNE9 571 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 ADPGKQ9BRR6 497 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 PABPC3Q9H361 631 aaKnown RBP22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 CYP3A43Q9HB55 503 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 STRIP2Q9ULQ0 834 aa22.34■■□□□ 1.17
CCDC88B-208ENST00000492980 GRIN2DO15399 1336 aa22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 F8VP50 259 aa22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 PTPN11Q06124 597 aaPredicted RBP22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 PTK6Q13882 451 aa22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 ATP13A4Q4VNC1 1196 aa22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 SYDE1Q6ZW31 735 aaPredicted RBP22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 HPDLQ96IR7 371 aa22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 KLHL11Q9NVR0 708 aa22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 CPA4Q9UI42 421 aa22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 ITGA11Q9UKX5 1188 aa22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 AGAP1Q9UPQ3 857 aa22.33■■□□□ 1.17
CCDC88B-208ENST00000492980 RRN3P2A6NIE6 340 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms