RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 L1RE1Q9UN81 338 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 COQ4Q9Y3A0 265 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 HCFC2Q9Y5Z7 792 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 MTCL1Q9Y4B5 1905 aaKnown RBP11.65□□□□□ -0.54
VPS13D-210ENST00000489961 SPDYE4A6NLX3 237 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 BECN2A8MW95 431 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 TBC1D4O60343 1298 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 TACC1O75410 805 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 PRKCSHP14314 528 aaPredicted RBP11.65□□□□□ -0.54
VPS13D-210ENST00000489961 CPB1P15086 417 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 COL19A1Q14993 1142 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 CTC1Q2NKJ3 1217 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 TCP11X2Q5H9J9 407 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 CDKAL1Q5VV42 579 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 SPOPLQ6IQ16 392 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 RSPO2Q6UXX9 243 aaPredicted RBP11.65□□□□□ -0.54
VPS13D-210ENST00000489961 LIMS2Q7Z4I7 341 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 SEMA4DQ92854 862 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 HLA-CQ95604 372 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 FAXDC2Q96IV6 333 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 PI4K2AQ9BTU6 479 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 NIF3L1Q9GZT8 377 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 SNX25Q9H3E2 840 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 DZANK1Q9NVP4 752 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 DDX43Q9NXZ2 648 aaKnown RBP11.65□□□□□ -0.54
VPS13D-210ENST00000489961 POLIQ9UNA4 740 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 COG5Q9UP83 839 aa11.65□□□□□ -0.54
VPS13D-210ENST00000489961 PES1O00541 588 aaKnown RBP11.64□□□□□ -0.55
VPS13D-210ENST00000489961 LINC01565O15544 149 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 ADAM12O43184 909 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 TGM5O43548 720 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 GLP2RO95838 553 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 EPCAMP16422 314 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 CDK11BP21127 795 aaKnown RBP11.64□□□□□ -0.55
VPS13D-210ENST00000489961 WARSP23381 471 aaKnown RBP11.64□□□□□ -0.55
VPS13D-210ENST00000489961 PCSK1P29120 753 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 ELF1P32519 619 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 TPM4P67936 248 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 TSPY1Q01534 308 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 ROR1Q01973 937 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 KCNC3Q14003 757 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 NCAPHQ15003 741 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 VWA3BQ502W6 1294 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 LIN9Q5TKA1 542 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 TPGS2Q68CL5 300 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 LILRA6Q6PI73 481 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 TMEM184AQ6ZMB5 413 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 SCARA5Q6ZMJ2 495 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 DCP1BQ8IZD4 617 aaKnown RBP11.64□□□□□ -0.55
VPS13D-210ENST00000489961 OR6B3Q8NGW1 331 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 ZNF461Q8TAF7 563 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 HDAC7Q8WUI4 952 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 KBTBD7Q8WVZ9 684 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 ELMO3Q96BJ8 720 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 ACBD6Q9BR61 282 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 NDST4Q9H3R1 872 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 PLEKHA4Q9H4M7 779 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 SMYD3Q9H7B4 428 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 UBE2ZQ9H832 354 aaPredicted RBP11.64□□□□□ -0.55
VPS13D-210ENST00000489961 CYP3A43Q9HB55 503 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 APOBEC3GQ9HC16 384 aaKnown RBP11.64□□□□□ -0.55
VPS13D-210ENST00000489961 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS13D-210ENST00000489961 SZT2Q5T011 3432 aa11.64□□□□□ -0.55
VPS13D-210ENST00000489961 WDR27A2RRH5 827 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 GTPBP10A4D1E9 387 aaKnown RBP11.63□□□□□ -0.55
VPS13D-210ENST00000489961 GABRDO14764 452 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 ABLIM3O94929 683 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 OR4Q2P0C623 313 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 TRIM21P19474 475 aaKnown RBP11.63□□□□□ -0.55
VPS13D-210ENST00000489961 GNL1P36915 607 aaPredicted RBP11.63□□□□□ -0.55
VPS13D-210ENST00000489961 RAP1GAPP47736 663 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 SMARCB1Q12824 385 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 GPR17Q13304 367 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 LRSAM1Q6UWE0 723 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 GBP6Q6ZN66 633 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 OSTM1Q86WC4 334 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 DHX40Q8IX18 779 aaKnown RBP11.63□□□□□ -0.55
VPS13D-210ENST00000489961 TTC39CQ8N584 583 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 KREMEN2Q8NCW0 462 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 EHBP1Q8NDI1 1231 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 VN1R2Q8NFZ6 395 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 OR10T2Q8NGX3 314 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 NT5C1BQ96P26 610 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 RTP3Q9BQQ7 232 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 MRPL45Q9BRJ2 306 aaKnown RBP11.63□□□□□ -0.55
VPS13D-210ENST00000489961 BCO2Q9BYV7 579 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 DNAI2Q9GZS0 605 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 ZCWPW1Q9H0M4 648 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 TSPY26PQ9H489 355 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 MAN1C1Q9NR34 630 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 GCNT4Q9P109 453 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 AFF4Q9UHB7 1163 aaKnown RBP11.63□□□□□ -0.55
VPS13D-210ENST00000489961 FBXW11Q9UKB1 542 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 CDH9Q9ULB4 789 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 MAFFQ9ULX9 164 aa11.63□□□□□ -0.55
VPS13D-210ENST00000489961 BARX2Q9UMQ3 279 aaPredicted RBP11.63□□□□□ -0.55
VPS13D-210ENST00000489961 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.62□□□□□ -0.55
VPS13D-210ENST00000489961 A8MXQ7 604 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 GOLGA6L19H0YKK7 550 aa11.62□□□□□ -0.55
VPS13D-210ENST00000489961 PRRG1O14668 218 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms