RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 TSPAN1O60635 241 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 TADA2AO75478 443 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 FAM13AO94988 1023 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 IDEP14735 1019 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 RHOQP17081 205 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 STARD6P59095 220 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 FAM160A1Q05DH4 1040 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 RAD51AP2Q09MP3 1159 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 USP41Q3LFD5 358 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 NOTUMQ6P988 496 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 LILRA6Q6PI73 481 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 DYMQ7RTS9 669 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 CEP57Q86XR8 500 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 CCDC65Q8IXS2 484 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 MYCT1Q8N699 235 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 HDAC7Q8WUI4 952 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 RHOBTB2Q9BYZ6 727 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 TNMDQ9H2S6 317 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 NXF3Q9H4D5 531 aaKnown RBP9.53□□□□□ -0.88
USP4-213ENST00000488520 SLC2A4RGQ9NR83 387 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 ZDHHC7Q9NXF8 308 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 DLL3Q9NYJ7 618 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 LARSQ9P2J5 1176 aaKnown RBP9.53□□□□□ -0.88
USP4-213ENST00000488520 PARP2Q9UGN5 583 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 ADAM28Q9UKQ2 775 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 COL4A2P08572 1712 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 KANSL1LA0AUZ9 987 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 H0YCG3 227 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 CCL16O15467 120 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 LAMTOR5O43504 91 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 GADD45BO75293 160 aaPredicted RBP9.52□□□□□ -0.89
USP4-213ENST00000488520 SMC2O95347 1197 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 NPTXRO95502 500 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 IL2RAP01589 272 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 MYL1P05976 194 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 ARF4P18085 180 aaPredicted RBP9.52□□□□□ -0.89
USP4-213ENST00000488520 GUCY2CP25092 1073 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 ABCD1P33897 745 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 SLC12A3P55017 1021 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 PTENP60484 403 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 CSTF1Q05048 431 aaKnown RBP9.52□□□□□ -0.89
USP4-213ENST00000488520 RTP2Q5QGT7 225 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 TSSK4Q6SA08 328 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 KRBA2Q6ZNG9 492 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 STXBP4Q6ZWJ1 553 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 C1orf186Q6ZWK4 172 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 KCNK18Q7Z418 384 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 ZBTB8OSQ8IWT0 167 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 GSTCDQ8NEC7 633 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 DEPTORQ8TB45 409 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 NANOS1Q8WY41 292 aaKnown RBP9.52□□□□□ -0.89
USP4-213ENST00000488520 SHDQ96IW2 340 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 TIGD1Q96MW7 591 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 KXD1Q9BQD3 176 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 PAAF1Q9BRP4 392 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 BCO2Q9BYV7 579 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 GRIP2Q9C0E4 1043 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 POLR3FQ9H1D9 316 aaPredicted RBP9.52□□□□□ -0.89
USP4-213ENST00000488520 C17orf75Q9HAS0 396 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.52□□□□□ -0.89
USP4-213ENST00000488520 FNIP2Q9P278 1114 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 ODF2LQ9ULJ1 636 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 HPSEQ9Y251 543 aa9.52□□□□□ -0.89
USP4-213ENST00000488520 FAM237AA0A1B0GTK4 181 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 CASTOR2A6NHX0 329 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 LRRIQ4A6NIV6 560 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 FAM170BA6NMN3 283 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 SFI1A8K8P3 1242 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 B4GALT5O43286 388 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 HIP1RO75146 1068 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 MBD3O95983 291 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 C8AP07357 584 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 GAP43P17677 238 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 AXLP30530 894 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 MCM4P33991 863 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 ASIC1P78348 528 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 DMP1Q13316 513 aaPredicted RBP9.51□□□□□ -0.89
USP4-213ENST00000488520 MLF2Q15773 248 aaPredicted RBP9.51□□□□□ -0.89
USP4-213ENST00000488520 SLC44A4Q53GD3 710 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 PPM1LQ5SGD2 360 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 FAM171A1Q5VUB5 890 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 ITFG1Q8TB96 612 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 ASAP3Q8TDY4 903 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 ING5Q8WYH8 240 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 FGF13Q92913 245 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 PAGE5Q96GU1 130 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 C7orf25Q9BPX7 421 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 CLSTN3Q9BQT9 956 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 C2orf40Q9H1Z8 148 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 PARVGQ9HBI0 331 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 POLD4Q9HCU8 107 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 KMT5AQ9NQR1 393 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 XPNPEP1Q9NQW7 623 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 LMBRD1Q9NUN5 540 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 BLOC1S4Q9NUP1 217 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 PANK4Q9NVE7 773 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 HCFC1R1Q9NWW0 138 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 FBXW11Q9UKB1 542 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 CDH7Q9ULB5 785 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 GIT1Q9Y2X7 761 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms