RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 SYN3O14994 580 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 SPTLC1O15269 473 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 GRM6O15303 877 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 CXCL14O95715 111 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 ADH1BP00325 375 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 TPM3P06753 285 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 ATP1A3P13637 1013 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 AARSP49588 968 aaKnown RBP eCLIP11.04□□□□□ -0.64
SKA1-204ENST00000488454 UBXN1Q04323 297 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 EXOC3L4Q17RC7 722 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 CD300LGQ6UXG3 332 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 DPH6Q7L8W6 267 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 TAS1R1Q7RTX1 841 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 SPRED2Q7Z698 418 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 THEM5Q8N1Q8 247 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 EHBP1Q8NDI1 1231 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 CXorf38Q8TB03 319 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 BCL7CQ8WUZ0 217 aaPredicted RBP11.04□□□□□ -0.64
SKA1-204ENST00000488454 PCMTD1Q96MG8 357 aaPredicted RBP11.04□□□□□ -0.64
SKA1-204ENST00000488454 TCF25Q9BQ70 676 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 PI4K2AQ9BTU6 479 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 TTPALQ9BTX7 342 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 HERC2P3Q9BVR0 1158 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 DNAI2Q9GZS0 605 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 HSD3B7Q9H2F3 369 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 VRTNQ9H8Y1 702 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.04□□□□□ -0.64
SKA1-204ENST00000488454 ENTPD7Q9NQZ7 604 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 TLR9Q9NR96 1032 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 GDAP2Q9NXN4 497 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 SLC27A5Q9Y2P5 690 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 CITO14578 2027 aa11.04□□□□□ -0.64
SKA1-204ENST00000488454 FNDC1Q4ZHG4 1894 aaPredicted RBP11.04□□□□□ -0.64
SKA1-204ENST00000488454 M0QZQ0 153 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 RFXAPO00287 272 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 C2CD2LO14523 706 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 CSPG5O95196 566 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 ASS1P00966 412 aaKnown RBP11.03□□□□□ -0.64
SKA1-204ENST00000488454 FAM163BP0C2L3 166 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 CTSAP10619 480 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 TYMPP19971 482 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 FGFR3P22607 806 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 IGFBP6P24592 240 aaPredicted RBP11.03□□□□□ -0.64
SKA1-204ENST00000488454 GLUD2P49448 558 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 UBASH3AP57075 661 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 USP46P62068 366 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 NOP14P78316 857 aaKnown RBP11.03□□□□□ -0.64
SKA1-204ENST00000488454 FANCCQ00597 558 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 CREMQ03060 361 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 YWHAHQ04917 246 aaPredicted RBP11.03□□□□□ -0.64
SKA1-204ENST00000488454 LRMPQ12912 555 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 SMC1AQ14683 1233 aaKnown RBP11.03□□□□□ -0.64
SKA1-204ENST00000488454 MIIPQ5JXC2 388 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 SCARA3Q6AZY7 606 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 ANKS3Q6ZW76 656 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 TMEM86AQ8N2M4 240 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 TOP6BLQ8N6T0 577 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 GDPD5Q8WTR4 605 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 RIN2Q8WYP3 895 aaPredicted RBP11.03□□□□□ -0.64
SKA1-204ENST00000488454 SEMA4DQ92854 862 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 PPP2R3CQ969Q6 453 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 FAXDC2Q96IV6 333 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 FAM81BQ96LP2 452 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 FAM161BQ96MY7 647 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 NT5C1BQ96P26 610 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 CRACR2AQ9BSW2 395 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 EMILIN2Q9BXX0 1053 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 OXCT2Q9BYC2 517 aaPredicted RBP11.03□□□□□ -0.64
SKA1-204ENST00000488454 XYLT2Q9H1B5 865 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 SNX25Q9H3E2 840 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 PRDM12Q9H4Q4 367 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 GCNT4Q9P109 453 aa11.03□□□□□ -0.64
SKA1-204ENST00000488454 TIMM13Q9Y5L4 95 aaPredicted RBP11.03□□□□□ -0.64
SKA1-204ENST00000488454 PTPRSQ13332 1948 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 LGALS16A8MUM7 142 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 CBFA2T2O43439 604 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 TRIM21P19474 475 aaKnown RBP11.02□□□□□ -0.65
SKA1-204ENST00000488454 TKTP29401 623 aaKnown RBP11.02□□□□□ -0.65
SKA1-204ENST00000488454 GNL1P36915 607 aaPredicted RBP11.02□□□□□ -0.65
SKA1-204ENST00000488454 LHX1P48742 406 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 ERVFC1P60507 584 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 YWHAEP62258 255 aaKnown RBP11.02□□□□□ -0.65
SKA1-204ENST00000488454 DSG1Q02413 1049 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 GRIN2CQ14957 1233 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 PLPP4Q5VZY2 271 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 WSCD1Q658N2 575 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 OVOS1Q6IE37 1185 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 SPOPLQ6IQ16 392 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 GPR65Q8IYL9 337 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 MRPL43Q8N983 215 aaKnown RBP11.02□□□□□ -0.65
SKA1-204ENST00000488454 OR6B3Q8NGW1 331 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 SPATA18Q8TC71 538 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 MRPL38Q96DV4 380 aaKnown RBP11.02□□□□□ -0.65
SKA1-204ENST00000488454 B3GALT6Q96L58 329 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 GAS2L1Q99501 681 aaPredicted RBP11.02□□□□□ -0.65
SKA1-204ENST00000488454 NIF3L1Q9GZT8 377 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 INTS2Q9H0H0 1204 aaKnown RBP11.02□□□□□ -0.65
SKA1-204ENST00000488454 ZBP1Q9H171 429 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 RBSNQ9H1K0 784 aa11.02□□□□□ -0.65
SKA1-204ENST00000488454 TTYH1Q9H313 450 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms