RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TISP43B9A030 160 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 VTNP04004 478 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 ESRRAP11474 423 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-228ENST00000486227 HSD17B3P37058 310 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 HSPA9P38646 679 aaKnown RBP11.58□□□□□ -0.56
HDAC6-228ENST00000486227 ORC1Q13415 861 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 THOC5Q13769 683 aaKnown RBP11.58□□□□□ -0.56
HDAC6-228ENST00000486227 RPS6KA2Q15349 733 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 KIZQ2M2Z5 673 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 EFHC2Q5JST6 749 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 SPOPLQ6IQ16 392 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 MTMR8Q96EF0 704 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 CARD9Q9H257 536 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 KCPQ6ZWJ8 1503 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 PIK3CDO00329 1044 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 TRPA1O75762 1119 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 MOCS2O96007 188 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-228ENST00000486227 NNMTP40261 264 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 VGLL4Q14135 290 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 PIGHQ14442 188 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-228ENST00000486227 BTNL9Q6UXG8 535 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 PPM1NQ8N819 430 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 IL31RAQ8NI17 732 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 AFDNP55196 1824 aaKnown RBP11.58□□□□□ -0.56
HDAC6-228ENST00000486227 FAM208AQ9UK61 1670 aaKnown RBP11.58□□□□□ -0.56
HDAC6-228ENST00000486227 PPFIA2O75334 1257 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 SNHG28P0DPA3 235 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 TGFB3P10600 412 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 PSMD6Q15008 389 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 STILQ15468 1287 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 YTHDF3Q7Z739 585 aaKnown RBP11.58□□□□□ -0.56
HDAC6-228ENST00000486227 VSIG10LQ86VR7 867 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 TRIM42Q8IWZ5 723 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 CEP120Q8N960 986 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 MCUQ8NE86 351 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 FEZF2Q8TBJ5 459 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 TTC25Q96NG3 672 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 TMBIM4Q9HC24 238 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 SLC38A7Q9NVC3 462 aa11.58□□□□□ -0.56
HDAC6-228ENST00000486227 TBC1D12O60347 775 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 ALDH5A1P51649 535 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-228ENST00000486227 SMTNL2Q2TAL5 461 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 ZNF484Q5JVG2 852 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 SYCP2LQ5T4T6 812 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 SLC47A2Q86VL8 602 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 DCLK2Q8N568 766 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 CASKIN2Q8WXE0 1202 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 TATDN2Q93075 761 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 TTC17Q96AE7 1141 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 PRMT1Q99873 361 aaKnown RBP11.57□□□□□ -0.56
HDAC6-228ENST00000486227 KLK14Q9P0G3 267 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 FAF1Q9UNN5 650 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-228ENST00000486227 ITGB5P18084 799 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 MRPS35P82673 323 aaKnown RBP11.57□□□□□ -0.56
HDAC6-228ENST00000486227 KLC1Q07866 573 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 AP1B1Q10567 949 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 RCN2Q14257 317 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 LRRC14Q15048 493 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 SMAD1Q15797 465 aaKnown RBP11.57□□□□□ -0.56
HDAC6-228ENST00000486227 MPZL3Q6UWV2 235 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 C9orf72Q96LT7 481 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 SUDS3Q9H7L9 328 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-228ENST00000486227 AIPL1Q9NZN9 384 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 TOPAZ1Q8N9V7 1692 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 TCP11X1B4DZS4 312 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 THPOP40225 353 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 NOTUMQ6P988 496 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 TRAPPC12Q8WVT3 735 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 TRIM62Q9BVG3 475 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 KDM4CQ9H3R0 1056 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 PARP4Q9UKK3 1724 aaKnown RBP11.57□□□□□ -0.56
HDAC6-228ENST00000486227 ROBO3Q96MS0 1386 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 A0A087WZ62 844 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 GYG2O15488 501 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 STAG3L1P0CL83 205 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 CYP2C8P10632 490 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 BFSP2Q13515 415 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 DBN1Q16643 649 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 CHADLQ6NUI6 762 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 AGGF1Q8N302 714 aaeCLIP11.57□□□□□ -0.56
HDAC6-228ENST00000486227 ETNPPLQ8TBG4 499 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 ATP8B4Q8TF62 1192 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 RAPGEF5Q92565 580 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 FGD4Q96M96 766 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 FDXACB1Q9BRP7 624 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-228ENST00000486227 ERP44Q9BS26 406 aa11.57□□□□□ -0.56
HDAC6-228ENST00000486227 CD4P01730 458 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 MAPTP10636 758 aaKnown RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 INSRRP14616 1297 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 MYL6P60660 151 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 LAMTOR4Q0VGL1 99 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 ECM1Q16610 540 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 DEFB115Q30KQ5 88 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 LRRC55Q6ZSA7 311 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 EPM2AIP1Q7L775 607 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 SPATA20Q8TB22 786 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 CGRRF1Q99675 332 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 ADAM33Q9BZ11 813 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 FGFR1OP2Q9NVK5 253 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 H3BRB1 525 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms