RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 BOLLQ8N9W6 283 aaKnown RBP5.08□□□□□ -1.6
VPS41-213ENST00000485955 PSD4Q8NDX1 1056 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 TOR1AIP2Q8NFQ8 470 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 MVB12AQ96EY5 273 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 ZNF764Q96H86 408 aaPredicted RBP5.08□□□□□ -1.6
VPS41-213ENST00000485955 LRFN3Q9BTN0 628 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 DUSP26Q9BV47 211 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 WDCPQ9H6R7 721 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 RSAD1Q9HA92 442 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 SEMA4GQ9NTN9 838 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 LMBRD1Q9NUN5 540 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 PTGFRNQ9P2B2 879 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 ANKRD6Q9Y2G4 727 aa5.08□□□□□ -1.6
VPS41-213ENST00000485955 SPATA31A6Q5VVP1 1343 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 LOC105371045A0A1W2PR82 267 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 ADM5C9JUS6 153 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 F5H697 171 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 DTNBO60941 627 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 IGLV2-14P01704 120 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 ALDH2P05091 517 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 PDGFRBP09619 1106 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 CHRM3P20309 590 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 NPTX2P47972 431 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 ANAPC15P60006 121 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 NKX6-1P78426 367 aaPredicted RBP5.07□□□□□ -1.6
VPS41-213ENST00000485955 MCL1Q07820 350 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 BOP1Q14137 746 aaKnown RBP5.07□□□□□ -1.6
VPS41-213ENST00000485955 ZNF267Q14586 743 aaPredicted RBP5.07□□□□□ -1.6
VPS41-213ENST00000485955 PLS1Q14651 629 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 TTF1Q15361 905 aaPredicted RBP5.07□□□□□ -1.6
VPS41-213ENST00000485955 ARHGEF25Q86VW2 580 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 HPS3Q969F9 1004 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 RHOBTB2Q9BYZ6 727 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 TINAGL1Q9GZM7 467 aaPredicted RBP5.07□□□□□ -1.6
VPS41-213ENST00000485955 PNPOQ9NVS9 261 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 NR2E3Q9Y5X4 410 aa5.07□□□□□ -1.6
VPS41-213ENST00000485955 SPATA31A3Q5VYP0 1347 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 LRRC3CA6NJW4 275 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 H3BUI4 141 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 CHRM2P08172 466 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 HDCP19113 662 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 EXOSC9Q06265 439 aaKnown RBP5.06□□□□□ -1.6
VPS41-213ENST00000485955 TCF15Q12870 199 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 PTPRRQ15256 657 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 ATAT1Q5SQI0 421 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 PPP1R32Q7Z5V6 425 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 PEG10Q86TG7 708 aaKnown RBP5.06□□□□□ -1.6
VPS41-213ENST00000485955 GRAMD1CQ8IYS0 662 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 CELF5Q8N6W0 485 aaKnown RBP5.06□□□□□ -1.6
VPS41-213ENST00000485955 PLBD2Q8NHP8 589 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 PGBD1Q96JS3 809 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 NUP88Q99567 741 aaPredicted RBP5.06□□□□□ -1.6
VPS41-213ENST00000485955 AMBRA1Q9C0C7 1298 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 KLK15Q9H2R5 256 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 SLC12A5Q9H2X9 1139 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 TYW1Q9NV66 732 aaKnown RBP5.06□□□□□ -1.6
VPS41-213ENST00000485955 ZDHHC8Q9ULC8 765 aa5.06□□□□□ -1.6
VPS41-213ENST00000485955 FNDC1Q4ZHG4 1894 aaPredicted RBP5.05□□□□□ -1.6
VPS41-213ENST00000485955 A0A0B4J269 797 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 WDR27A2RRH5 827 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 MASP2O00187 686 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 AKAP10O43572 662 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 CHEK2O96017 543 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 RHOP08100 348 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 FBLP22087 321 aaKnown RBP5.05□□□□□ -1.6
VPS41-213ENST00000485955 NDUFV1P49821 464 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 RAB27AP51159 221 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 ELLP55199 621 aaPredicted RBP5.05□□□□□ -1.6
VPS41-213ENST00000485955 IGBP1P78318 339 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 TUBB3Q13509 450 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 TXNRD1Q16881 649 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 MAP3K14Q99558 947 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 CNPPD1Q9BV87 410 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 RTFDC1Q9BY42 306 aaPredicted RBP5.05□□□□□ -1.6
VPS41-213ENST00000485955 KMT5AQ9NQR1 393 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.05□□□□□ -1.6
VPS41-213ENST00000485955 ASB6Q9NWX5 421 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 FEZ2Q9UHY8 353 aaPredicted RBP5.05□□□□□ -1.6
VPS41-213ENST00000485955 PCDHA6Q9UN73 950 aa5.05□□□□□ -1.6
VPS41-213ENST00000485955 ADGRA2Q96PE1 1338 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 M0QYG6 137 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 AP1G1O43747 822 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 GRIA3P42263 894 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 CCDC142Q17RM4 750 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 CCDC157Q569K6 752 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 VPS53Q5VIR6 699 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 TPH2Q8IWU9 490 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 PCSK9Q8NBP7 692 aaKnown RBP5.04□□□□□ -1.6
VPS41-213ENST00000485955 B3GALNT2Q8NCR0 500 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 ZNF384Q8TF68 577 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 JPH3Q8WXH2 748 aaPredicted RBP5.04□□□□□ -1.6
VPS41-213ENST00000485955 SLC35A4Q96G79 324 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 FAM167AQ96KS9 214 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 CGRRF1Q99675 332 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 ARMT1Q9H993 441 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 KLC4Q9NSK0 619 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 SLC17A6Q9P2U8 582 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 ST3GAL5Q9UNP4 418 aa5.04□□□□□ -1.6
VPS41-213ENST00000485955 LINC00473A8K010 186 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 TRIAP1O43715 76 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms