RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 PAXIP1Q6ZW49 1069 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-212ENST00000477970 CCHCR1Q8TD31 782 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 OPTNQ96CV9 577 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 RSPH14Q9UHP6 348 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 PNMA3Q9UL41 463 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 MAGEB2O15479 319 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 FAM107AO95990 144 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 PGK2P07205 417 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 MCF2P10911 925 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 GJA5P36382 358 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 CETN2P41208 172 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 PIGHQ14442 188 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-212ENST00000477970 PPP1R7Q15435 360 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 YTHDF3Q7Z739 585 aaKnown RBP12.95□□□□□ -0.34
PTPRF-212ENST00000477970 VTA1Q9NP79 307 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 NDC80O14777 642 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 TCEA3O75764 348 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 STAU1O95793 577 aaKnown RBP12.95□□□□□ -0.34
PTPRF-212ENST00000477970 HSPA8P11142 646 aaKnown RBP12.95□□□□□ -0.34
PTPRF-212ENST00000477970 ATICP31939 592 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 TAS2R40P59535 323 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 GUCY1A3Q02108 690 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 ARHGAP1Q07960 439 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 TRPC3Q13507 836 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 ZBTB33Q86T24 672 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 FNIP1Q8TF40 1166 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 TRAIPQ9BWF2 469 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 R3HDMLQ9H3Y0 253 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 DDX56Q9NY93 547 aaKnown RBP12.95□□□□□ -0.34
PTPRF-212ENST00000477970 NOVA2Q9UNW9 492 aaKnown RBP12.95□□□□□ -0.34
PTPRF-212ENST00000477970 EFR3BQ9Y2G0 817 aa12.95□□□□□ -0.34
PTPRF-212ENST00000477970 MYO1CO00159 1063 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 MED7O43513 233 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 TRAPPC3O43617 180 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 SRGAP2CP0DJJ0 459 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 TXNP10599 105 aaKnown RBP12.94□□□□□ -0.34
PTPRF-212ENST00000477970 ZNF699Q32M78 642 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 ZNF792Q3KQV3 632 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 POLNQ7Z5Q5 900 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 FBXO16Q8IX29 292 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-212ENST00000477970 HERPUD2Q9BSE4 406 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 TCHPQ9BT92 498 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 OSBPL8Q9BZF1 889 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 CHST7Q9NS84 486 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 MCM3APO60318 1980 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 C5orf60A6NFR6 353 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 ALDH1A1P00352 501 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 MMP13P45452 471 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 PHKA2P46019 1235 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 SNAPC2Q13487 334 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 EFCAB12Q6NXP0 572 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 NLRP14Q86W24 1093 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 TRIM50Q86XT4 487 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 RHPN2Q8IUC4 686 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 LRRC71Q8N4P6 559 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 MS4A4AQ96JQ5 239 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 ZIC5Q96T25 663 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 FRMD8P1Q9BZ68 369 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-212ENST00000477970 CDT1Q9H211 546 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 AAASQ9NRG9 546 aa12.94□□□□□ -0.34
PTPRF-212ENST00000477970 NDUFAB1O14561 156 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 RALAP11233 206 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 MARK3P27448 753 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 CCT5P48643 541 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 GTF2A2P52657 109 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 MAGOHP61326 146 aaKnown RBP12.93□□□□□ -0.34
PTPRF-212ENST00000477970 SLC29A2Q14542 456 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 SEZ6Q53EL9 994 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 EEPD1Q7L9B9 569 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 NT5DC4Q86YG4 428 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 PASD1Q8IV76 773 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 CCDC89Q8N998 374 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 PPTC7Q8NI37 304 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 MYCBPAPQ8TBZ2 947 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 C1orf54Q8WWF1 131 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 SEMA4AQ9H3S1 761 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 ASB7Q9H672 318 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 DRG1Q9Y295 367 aaKnown RBP12.93□□□□□ -0.34
PTPRF-212ENST00000477970 CEP83Q9Y592 693 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 FAM170AA1A519 330 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 SHBGP04278 402 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 KCNJ1P48048 391 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 ZNF252P-AS1Q0IIN9 211 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 AMHR2Q16671 573 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 WDTC1Q8N5D0 677 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 CXorf38Q8TB03 319 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 SLITRK1Q96PX8 696 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 CCDC134Q9H6E4 229 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 RPF1Q9H9Y2 349 aaKnown RBP12.93□□□□□ -0.34
PTPRF-212ENST00000477970 CYP3A43Q9HB55 503 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 IFT122Q9HBG6 1241 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 WDR35Q9P2L0 1181 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 CAND2O75155 1236 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 HARSP12081 509 aaKnown RBP12.93□□□□□ -0.34
PTPRF-212ENST00000477970 HOXD8P13378 290 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-212ENST00000477970 KLRC2P26717 231 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 TAPT1Q6NXT6 567 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 DNAJC24Q6P3W2 148 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 MICALCLQ6ZW33 695 aa12.93□□□□□ -0.34
PTPRF-212ENST00000477970 IPO4Q8TEX9 1081 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms