RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 ZNF844Q08AG5 666 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 ZNF484Q5JVG2 852 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 AMIGO3Q86WK7 504 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 WDR75Q8IWA0 830 aaKnown RBP15.38■□□□□ 0.05
HDAC6-220ENST00000477528 C12orf56Q8IXR9 622 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 PPIL6Q8IXY8 311 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 FAM71AQ8IYT1 594 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 FRMD3A2A2Y4 597 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 IQCA1LA6NCM1 817 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 LCP1P13796 627 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 PTPRAP18433 802 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 MYL6P60660 151 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 ZPBP2Q6X784 338 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 SPATC1LQ9H0A9 340 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 SMYD2Q9NRG4 433 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 RAB6BQ9NRW1 208 aa15.38■□□□□ 0.05
HDAC6-220ENST00000477528 PIN4Q9Y237 131 aaKnown RBP15.38■□□□□ 0.05
HDAC6-220ENST00000477528 RPSAP08865 295 aaKnown RBP15.37■□□□□ 0.05
HDAC6-220ENST00000477528 SKOR1P84550 965 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 TFDP3Q5H9I0 405 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 SPDYCQ5MJ68 293 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 RNF139Q8WU17 664 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 HES6Q96HZ4 224 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 ETNK1Q9HBU6 452 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 NOP53Q9NZM5 478 aaKnown RBP15.37■□□□□ 0.05
HDAC6-220ENST00000477528 ARFIP2P53365 341 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 COPS2P61201 443 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 SLC51AQ86UW1 340 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 PAK5Q9P286 719 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 SLC12A6Q9UHW9 1150 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 DCTN4Q9UJW0 460 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 IGLV3-22A0A075B6J6 115 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 HAUS5O94927 633 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 RARAP10276 462 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 CLCN3P51790 818 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 KPNA2P52292 529 aaKnown RBP15.37■□□□□ 0.05
HDAC6-220ENST00000477528 THOC5Q13769 683 aaKnown RBP15.37■□□□□ 0.05
HDAC6-220ENST00000477528 C4orf33Q8N1A6 199 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 UBA3Q8TBC4 463 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 SEMA4AQ9H3S1 761 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 MROH8Q9H579 483 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 SPAG6O75602 509 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 ZNF189O75820 626 aaPredicted RBP15.37■□□□□ 0.05
HDAC6-220ENST00000477528 PTGER2P43116 358 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 COG7P83436 770 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 LAMTOR4Q0VGL1 99 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 ITGB3BPQ13352 177 aaPredicted RBP15.37■□□□□ 0.05
HDAC6-220ENST00000477528 CCDC60Q8IWA6 550 aaPredicted RBP15.37■□□□□ 0.05
HDAC6-220ENST00000477528 CD302Q8IX05 232 aa15.37■□□□□ 0.05
HDAC6-220ENST00000477528 CCT8L1PA6NM43 557 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 ADCY3O60266 1144 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 PGK2P07205 417 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 RPL21P46778 160 aaKnown RBP15.36■□□□□ 0.05
HDAC6-220ENST00000477528 ALDH5A1P51649 535 aaPredicted RBP15.36■□□□□ 0.05
HDAC6-220ENST00000477528 NCKAP1LP55160 1127 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 TRPM8Q7Z2W7 1104 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 ZNF606Q8WXB4 792 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 SHC3Q92529 594 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 ACSF2Q96CM8 615 aaPredicted RBP15.36■□□□□ 0.05
HDAC6-220ENST00000477528 PPARGC1AQ9UBK2 798 aaKnown RBP15.36■□□□□ 0.05
HDAC6-220ENST00000477528 DOT1LQ8TEK3 1739 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 KRT10P13645 584 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 AP1B1Q10567 949 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 ABI1Q8IZP0 508 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 KRT35Q92764 455 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 FGFR1OP2Q9NVK5 253 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 GOLGA8QA0A0J9YX86 632 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 GOLGA8OA6NCC3 632 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 GOLGA8NF8WBI6 632 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 GMNNO75496 209 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 CD4P01730 458 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 C3orf62Q6ZUJ4 267 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 APPL2Q8NEU8 664 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 KIAA1257Q9ULG3 409 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 KLRG2A4D1S0 409 aaPredicted RBP15.36■□□□□ 0.05
HDAC6-220ENST00000477528 GRAP2O75791 330 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 APRTP07741 180 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 FBXW10Q5XX13 1052 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 RWDD4Q6NW29 188 aaKnown RBP15.36■□□□□ 0.05
HDAC6-220ENST00000477528 BBS5Q8N3I7 341 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 DCLK3Q9C098 648 aa15.36■□□□□ 0.05
HDAC6-220ENST00000477528 NFASCO94856 1347 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 GYG2O15488 501 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 ATP9AO75110 1047 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 VDRP11473 427 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 BOLA3Q53S33 107 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 SPOCD1Q6ZMY3 1216 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 BRSK2Q8IWQ3 736 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 CCDC97Q96F63 343 aaPredicted RBP15.35■□□□□ 0.05
HDAC6-220ENST00000477528 PORCNQ9H237 461 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 ADARB2Q9NS39 739 aaKnown RBP15.35■□□□□ 0.05
HDAC6-220ENST00000477528 N4BP2Q86UW6 1770 aaPredicted RBP15.35■□□□□ 0.05
HDAC6-220ENST00000477528 YDJCA8MPS7 323 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 DYNC1LI2O43237 492 aaPredicted RBP15.35■□□□□ 0.05
HDAC6-220ENST00000477528 STIP1P31948 543 aaKnown RBP15.35■□□□□ 0.05
HDAC6-220ENST00000477528 GOLGA7BQ2TAP0 167 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 LRRC34Q8IZ02 419 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 THEM5Q8N1Q8 247 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 CCDC68Q9H2F9 335 aa15.35■□□□□ 0.05
HDAC6-220ENST00000477528 FAM96AQ9H5X1 160 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms