RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 GJA1P17302 382 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 CD72P21854 359 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 ME1P48163 572 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 AMPD3Q01432 767 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 PLD1Q13393 1074 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 UBXN2BQ14CS0 331 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 STXBP4Q6ZWJ1 553 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 METTL23Q86XA0 190 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 NT5DC4Q86YG4 428 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 TTC9BQ8N6N2 239 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 IQUBQ8NA54 791 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 ATAD1Q8NBU5 361 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 OR10T2Q8NGX3 314 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 FAM84AQ96KN4 292 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 PLA2G2FQ9BZM2 168 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 DSEQ9UL01 958 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 SLC27A5Q9Y2P5 690 aa16.97■□□□□ 0.31
CCDC88B-205ENST00000472524 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 EXTL3O43909 919 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 SOAT2O75908 522 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 ITGB3P05106 788 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 POLR2BP30876 1174 aaKnown RBP16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 ALDH1A3P47895 512 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 DNM1Q05193 864 aaKnown RBP16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 SV2CQ496J9 727 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 SLC39A12Q504Y0 691 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 WSCD1Q658N2 575 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 TANGO2Q6ICL3 276 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 CENPPQ6IPU0 288 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 ZC3H14Q6PJT7 736 aaKnown RBP16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 ERMP1Q7Z2K6 904 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 KIAA2013Q8IYS2 634 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 GPD1LQ8N335 351 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 ZNF560Q96MR9 790 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 DNAJC25Q9H1X3 360 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 SPATA6Q9NWH7 488 aaPredicted RBP16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 PCDHA7Q9UN72 937 aa16.96■□□□□ 0.31
CCDC88B-205ENST00000472524 ZNF292O60281 2723 aa16.96■□□□□ 0.3
CCDC88B-205ENST00000472524 OBSL1O75147 1896 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 DMXL1Q9Y485 3027 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 F5P12259 2224 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 FAM170BA6NMN3 283 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 MOSPD3O75425 235 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 ECI2O75521 394 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 CASP1P29466 404 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 EPHB3P54753 998 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 PFKPQ01813 784 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 PRKCQQ04759 706 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 TEAD2Q15562 447 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 FAM78AQ5JUQ0 283 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 THEM5Q8N1Q8 247 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 C1orf127Q8N9H9 656 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 LEMD2Q8NC56 503 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 CACTINQ8WUQ7 758 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 ELSPBP1Q96BH3 223 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 RMDN1Q96DB5 314 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 SEPT5Q99719 369 aaPredicted RBP16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 BCO2Q9BYV7 579 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 BLZF1Q9H2G9 400 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 SLITRK6Q9H5Y7 841 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 PDE11AQ9HCR9 933 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 FAM13BQ9NYF5 915 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 AGAP1Q9UPQ3 857 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 PATJQ8NI35 1801 aa16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 KIF26AQ9ULI4 1882 aaPredicted RBP16.95■□□□□ 0.3
CCDC88B-205ENST00000472524 KPNA7A9QM74 516 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 MICAL2O94851 1124 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 TMEM191BP0C7N4 346 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 FCARP24071 287 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 EPHA5P54756 1037 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 BFSP1Q12934 665 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 GRM2Q14416 872 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 FAM26FQ5R3K3 315 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 LMBRD2Q68DH5 695 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 TPRG1Q6ZUI0 275 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 TMC8Q8IU68 726 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 DCLK2Q8N568 766 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 SHKBP1Q8TBC3 707 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 BORCS6Q96GS4 357 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 ZSWIM3Q96MP5 696 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 ASB16Q96NS5 453 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 C7orf25Q9BPX7 421 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 HINFPQ9BQA5 517 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 MTMR12Q9C0I1 747 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 ZCWPW1Q9H0M4 648 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 MAGEF1Q9HAY2 307 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 ZFP14Q9HCL3 533 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 LTB4R2Q9NPC1 389 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 CFAP45Q9UL16 551 aa16.94■□□□□ 0.3
CCDC88B-205ENST00000472524 COL4A2P08572 1712 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 FANCMQ8IYD8 2048 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 A0A1W2PRU2 124 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 EIF3DO15371 548 aaKnown RBP eCLIP16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 KRT19P08727 400 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 HOXD13P35453 343 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 PNPLA4P41247 253 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 AFMP43652 599 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 MGAT5BQ3V5L5 792 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 RESP18Q5W5W9 173 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 SCARA3Q6AZY7 606 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms