RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 URODP06132 367 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 GALTP07902 379 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 HMGB1P09429 215 aaKnown RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 HNRNPA1P09651 372 aaKnown RBP eCLIP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 CDK4P11802 303 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 BRD2P25440 801 aaKnown RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 ZAP70P43403 619 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 MRPL12P52815 198 aaKnown RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 CNGB1Q14028 1251 aaPredicted RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 TLR1Q15399 786 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 ENOX2Q16206 610 aaKnown RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 KIZQ2M2Z5 673 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 ZSCAN23Q3MJ62 389 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 ANO7Q6IWH7 933 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 FBXL19Q6PCT2 694 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 GDF7Q7Z4P5 450 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 RASSF3Q86WH2 238 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 HEATR4Q86WZ0 1026 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 ETFBKMTQ8IXQ9 262 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 LSMEM2Q8N112 164 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 ENGASEQ8NFI3 743 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 DNERQ8NFT8 737 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 ZDHHC1Q8WTX9 485 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 CNOT6LQ96LI5 555 aaKnown RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 CCNL2Q96S94 520 aaPredicted RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 TMEM209Q96SK2 561 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 LZTS2Q9BRK4 669 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 MRPL9Q9BYD2 267 aaKnown RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 RXFP1Q9HBX9 757 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 SMC4Q9NTJ3 1288 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 HCFC1R1Q9NWW0 138 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 KLF15Q9UIH9 416 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 FNDC3AQ9Y2H6 1198 aaKnown RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 TRPV2Q9Y5S1 764 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 NOTCH4Q99466 2003 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 A0A1W2PQD8 194 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 RNF212BA8MTL3 300 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 WDR64B1ANS9 1081 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 CDK2AP1O14519 115 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 SMARCA5O60264 1052 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 XYLBO75191 536 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 CILPO75339 1184 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 MPOP05164 745 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 CEBPBP17676 345 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 GLDCP23378 1020 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 CRYBB1P53674 252 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 RARSP54136 660 aaKnown RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 MLLT10P55197 1068 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 TMEM62Q0P6H9 643 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 ZNF124Q15973 351 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 RABL6Q3YEC7 729 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 AXDND1Q5T1B0 1012 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 LMBRD2Q68DH5 695 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 SP5Q6BEB4 398 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 FSTL4Q6MZW2 842 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 DEFB119Q8N690 84 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 ARL14EPQ8N8R7 260 aaPredicted RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 EDEM1Q92611 657 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 ABHD17AQ96GS6 310 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 TCTN2Q96GX1 697 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 SPACA7Q96KW9 195 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 CHMP4AQ9BY43 222 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 GAREM1Q9H706 876 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 METTL5Q9NRN9 209 aaKnown RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 DNMT3BQ9UBC3 853 aaKnown RBP5.76□□□□□ -1.49
HMGB1-207ENST00000468384 SWAP70Q9UH65 585 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 SSX2IPQ9Y2D8 614 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 TELO2Q9Y4R8 837 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 HRH3Q9Y5N1 445 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 KNL1Q8NG31 2342 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 VWA8A3KMH1 1905 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 MYLKQ15746 1914 aa5.76□□□□□ -1.49
HMGB1-207ENST00000468384 ZFC3H1O60293 1989 aaKnown RBP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 SERTM1A2A2V5 107 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 HEATR9A2RTY3 570 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 M0QZ92 97 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 CHADO15335 359 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 GRID2O43424 1007 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 RFPL3O75679 317 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 PDGFAP04085 211 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 MZF1P28698 734 aaPredicted RBP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 VIPR2P41587 438 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 GRK6P43250 576 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 CDR1P51861 262 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 SNAP25P60880 206 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 DNM1Q05193 864 aaKnown RBP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 SCRN1Q12765 414 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 GRSF1Q12849 480 aaKnown RBP eCLIP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 SLC5A9Q2M3M2 681 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 TMEM196Q5HYL7 178 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 Q71RC1 249 aaPredicted RBP5.75□□□□□ -1.49
HMGB1-207ENST00000468384 CDH24Q86UP0 819 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 MFSD6LQ8IWD5 586 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 ALDH16A1Q8IZ83 802 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 CACTIN-AS1Q8N1I8 211 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 MDGA1Q8NFP4 955 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 RPLP0P6Q8NHW5 317 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 RNF34Q969K3 372 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 CCDC17Q96LX7 622 aa5.75□□□□□ -1.49
HMGB1-207ENST00000468384 NACC1Q96RE7 527 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms