RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 DOCK6Q96HP0 2047 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 DCXO43602 365 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 HUS1O60921 280 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 GADD45BO75293 160 aaPredicted RBP14.03□□□□□ -0.16
COL28A1-206ENST00000465339 ADCY1Q08828 1119 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 ZNF658Q5TYW1 1059 aaPredicted RBP14.03□□□□□ -0.16
COL28A1-206ENST00000465339 LMBRD2Q68DH5 695 aaPredicted RBP14.03□□□□□ -0.16
COL28A1-206ENST00000465339 DPH6Q7L8W6 267 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 TRAPPC11Q7Z392 1133 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 TMEM86AQ8N2M4 240 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 TDRD5Q8NAT2 981 aaKnown RBP14.03□□□□□ -0.16
COL28A1-206ENST00000465339 FEZF2Q8TBJ5 459 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 PARD3BQ8TEW8 1205 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 KHSRPQ92945 711 aaKnown RBP eCLIP14.03□□□□□ -0.16
COL28A1-206ENST00000465339 CYP4F11Q9HBI6 524 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.03□□□□□ -0.16
COL28A1-206ENST00000465339 SIX4Q9UIU6 781 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 MAPK8IP1Q9UQF2 711 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 FRMD4BQ9Y2L6 1034 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 PCDHA5Q9Y5H7 936 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 CLUHO75153 1309 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 PTPRJQ12913 1337 aa14.03□□□□□ -0.16
COL28A1-206ENST00000465339 C2CD4DB7Z1M9 353 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 MAPK13O15264 365 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 CCL16O15467 120 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 SEC24AO95486 1093 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 LRG1P02750 347 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 SP100P23497 879 aaPredicted RBP14.02□□□□□ -0.17
COL28A1-206ENST00000465339 UBE2HP62256 183 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 CLDN10P78369 228 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 SMARCB1Q12824 385 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 BFSP1Q12934 665 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 COBLL1Q53SF7 1204 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 WSCD1Q658N2 575 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 RNF19BQ6ZMZ0 732 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 SPATA18Q8TC71 538 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 HPDLQ96IR7 371 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 EPHX3Q9H6B9 360 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 HSFX1Q9UBD0 423 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 POLIQ9UNA4 740 aa14.02□□□□□ -0.17
COL28A1-206ENST00000465339 CST3P01034 146 aaPredicted RBP14.01□□□□□ -0.17
COL28A1-206ENST00000465339 HOXB3P14651 431 aaPredicted RBP14.01□□□□□ -0.17
COL28A1-206ENST00000465339 PTPN2P17706 415 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 FSHRP23945 695 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 NR2F2P24468 414 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 LHX1P48742 406 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 CASP4P49662 377 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 ADAM9Q13443 819 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 EDRF1Q3B7T1 1238 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 LCE2DQ5TA82 110 aaPredicted RBP14.01□□□□□ -0.17
COL28A1-206ENST00000465339 CEP135Q66GS9 1140 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 GRASPQ7Z6J2 395 aaPredicted RBP14.01□□□□□ -0.17
COL28A1-206ENST00000465339 ELMOD1Q8N336 334 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 TOP6BLQ8N6T0 577 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 ZNF516Q92618 1163 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 FAM84AQ96KN4 292 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 ZCWPW1Q9H0M4 648 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 GZF1Q9H116 711 aaPredicted RBP14.01□□□□□ -0.17
COL28A1-206ENST00000465339 LIMD1Q9UGP4 676 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 MUTYHQ9UIF7 546 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 INSL5Q9Y5Q6 135 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 SNX9Q9Y5X1 595 aa14.01□□□□□ -0.17
COL28A1-206ENST00000465339 ZFP37Q9Y6Q3 630 aaPredicted RBP14.01□□□□□ -0.17
COL28A1-206ENST00000465339 DOCK8Q8NF50 2099 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 IKBKBO14920 756 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 PHACTR2O75167 634 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 FAM163BP0C2L3 166 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 OR4Q2P0C623 313 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 ATICP31939 592 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 GBP2P32456 591 aaPredicted RBP14□□□□□ -0.17
COL28A1-206ENST00000465339 PSMC2P35998 433 aaKnown RBP14□□□□□ -0.17
COL28A1-206ENST00000465339 PPP1R2P41236 205 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 PRCPP42785 496 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 MYL7Q01449 175 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 ENPEPQ07075 957 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 PLD1Q13393 1074 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 TRPC3Q13507 836 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 PTPN21Q16825 1174 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 ZCWPW2Q504Y3 356 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 SCARA3Q6AZY7 606 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 CENPPQ6IPU0 288 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 SMYD4Q8IYR2 804 aaPredicted RBP14□□□□□ -0.17
COL28A1-206ENST00000465339 DCP1BQ8IZD4 617 aaKnown RBP14□□□□□ -0.17
COL28A1-206ENST00000465339 PDCL2Q8N4E4 241 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 OR10T2Q8NGX3 314 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 C2orf15Q8WU43 125 aaKnown RBP14□□□□□ -0.17
COL28A1-206ENST00000465339 ZNF512Q96ME7 567 aaPredicted RBP14□□□□□ -0.17
COL28A1-206ENST00000465339 RTP3Q9BQQ7 232 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 ACBD6Q9BR61 282 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 AVENQ9NQS1 362 aaPredicted RBP14□□□□□ -0.17
COL28A1-206ENST00000465339 DNMT3BQ9UBC3 853 aaKnown RBP14□□□□□ -0.17
COL28A1-206ENST00000465339 L1RE1Q9UN81 338 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 NOTCH4Q99466 2003 aa14□□□□□ -0.17
COL28A1-206ENST00000465339 MTMR11A4FU01 709 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 LRRIQ3A6PVS8 624 aaPredicted RBP13.99□□□□□ -0.17
COL28A1-206ENST00000465339 GABRDO14764 452 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 GPR37L1O60883 481 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 STAU1O95793 577 aaKnown RBP13.99□□□□□ -0.17
COL28A1-206ENST00000465339 LAMP2P13473 410 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 ALDH1A3P47895 512 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms