RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 RAB3IPQ96QF0 476 aaPredicted RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 DDX50Q9BQ39 737 aaKnown RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 NTPCRQ9BSD7 190 aaKnown RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 DENND2DQ9H6A0 471 aaPredicted RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 CCDC134Q9H6E4 229 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 LRRC19Q9H756 370 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 KIAA1586Q9HCI6 787 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 TXLNGQ9NUQ3 528 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 HACL1Q9UJ83 578 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ZFP69BQ9UJL9 534 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 GTF3C4Q9UKN8 822 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 DNPEPQ9ULA0 475 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 DICER1Q9UPY3 1922 aaKnown RBP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 SGK1O00141 431 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 ATP2A1O14983 1001 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 KCNA2P16389 499 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 ADRA1DP25100 572 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 SFNP31947 248 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 BACE1P56817 501 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 PSMC5P62195 406 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 SATB1Q01826 763 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 PDIA2Q13087 525 aaKnown RBP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 NBPF12Q5TAG4 269 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 RNF220Q5VTB9 566 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 SLC39A4Q6P5W5 647 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 MAP4K3Q8IVH8 894 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 FAM71AQ8IYT1 594 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 ATG4CQ96DT6 458 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 PRR11Q96HE9 360 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 TMEM121Q9BTD3 319 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 FBXO6Q9NRD1 293 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 WHRNQ9P202 907 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 ZNF862O60290 1169 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 FGFR1P11362 822 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 PECAM1P16284 738 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 RFC5P40937 340 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 POLGP54098 1239 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 OAZ1P54368 228 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 DALRD3Q5D0E6 543 aaKnown RBP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 SPDYCQ5MJ68 293 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 ISLR2Q6UXK2 745 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 ZC3H18Q86VM9 953 aaKnown RBP13.13□□□□□ -0.31
HDAC4-208ENST00000463007 BSNDQ8WZ55 320 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 RMDN3Q96TC7 470 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 OSBPL8Q9BZF1 889 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 ZFATQ9P243 1243 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 ARMCX1Q9P291 453 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 COQ4Q9Y3A0 265 aa13.13□□□□□ -0.31
HDAC4-208ENST00000463007 WDR64B1ANS9 1081 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 HNRNPDLO14979 420 aaKnown RBP13.12□□□□□ -0.31
HDAC4-208ENST00000463007 LINGO3P0C6S8 592 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 ACOT2P49753 483 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 KRT76Q01546 638 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 CDR2Q01850 454 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 SMTNL2Q2TAL5 461 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 DSTYKQ6XUX3 929 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 PPP1R21Q6ZMI0 780 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 ASRGL1Q7L266 308 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 SAMD7Q7Z3H4 446 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 MICALL2Q8IY33 904 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 GPRASP2Q96D09 838 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 TELO2Q9Y4R8 837 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 DENND3A2RUS2 1198 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 FSCN2O14926 492 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 PEX11AO75192 247 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 PTPRAP18433 802 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 ATP4AP20648 1035 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 CNGA1P29973 690 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 GMPSP49915 693 aaPredicted RBP13.12□□□□□ -0.31
HDAC4-208ENST00000463007 SPARCL1Q14515 664 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 CLUL1Q15846 466 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 KHDC1Q4VXA5 237 aaKnown RBP13.12□□□□□ -0.31
HDAC4-208ENST00000463007 TMEM270Q6UE05 265 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 SV2AQ7L0J3 742 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 KIFAP3Q92845 792 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 CYTH2Q99418 400 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 RNPEPL1Q9HAU8 725 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 GGPS1O95749 300 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 KITP10721 976 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 CALB2P22676 271 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 RPL7AP62424 266 aaKnown RBP13.12□□□□□ -0.31
HDAC4-208ENST00000463007 KRT39Q6A163 491 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 ANO7Q6IWH7 933 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 ACAD10Q6JQN1 1059 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 NLRP9Q7RTR0 991 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 MCUR1Q96AQ8 359 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 MOV10L1Q9BXT6 1211 aaKnown RBP13.12□□□□□ -0.31
HDAC4-208ENST00000463007 BATF3Q9NR55 127 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 RAB20Q9NX57 234 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 PRKAG3Q9UGI9 489 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 NUMBLQ9Y6R0 609 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 MROH7Q68CQ1 1323 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 ADGRA3Q8IWK6 1321 aa13.12□□□□□ -0.31
HDAC4-208ENST00000463007 TESPA1A2RU30 521 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-208ENST00000463007 ENPEPQ07075 957 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 RCN2Q14257 317 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 RCN1Q15293 331 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 LRRC36Q1X8D7 754 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 LRRC6Q86X45 466 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms