RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 PIK3R5Q8WYR1 880 aa13.18□□□□□ -0.3
HDAC4-206ENST00000460235 SYN2Q92777 582 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-206ENST00000460235 TATDN2Q93075 761 aa13.18□□□□□ -0.3
HDAC4-206ENST00000460235 ENTPD7Q9NQZ7 604 aa13.18□□□□□ -0.3
HDAC4-206ENST00000460235 TLR9Q9NR96 1032 aa13.18□□□□□ -0.3
HDAC4-206ENST00000460235 CISHQ9NSE2 258 aa13.18□□□□□ -0.3
HDAC4-206ENST00000460235 DDX43Q9NXZ2 648 aaKnown RBP13.18□□□□□ -0.3
HDAC4-206ENST00000460235 CDH9Q9ULB4 789 aa13.18□□□□□ -0.3
HDAC4-206ENST00000460235 CAPN11Q9UMQ6 739 aa13.18□□□□□ -0.3
HDAC4-206ENST00000460235 COLQQ9Y215 455 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-206ENST00000460235 BACE2Q9Y5Z0 518 aa13.18□□□□□ -0.3
HDAC4-206ENST00000460235 LCHNA4D1U4 455 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 GABRDO14764 452 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 PPEF2O14830 753 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 SPTLC1O15269 473 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 WEE2P0C1S8 567 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 CTSAP10619 480 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 FERP16591 822 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 PBX1P40424 430 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 USP8P40818 1118 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 GSDMDP57764 484 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 DRAP1Q14919 205 aaPredicted RBP13.17□□□□□ -0.3
HDAC4-206ENST00000460235 ARHGAP44Q17R89 818 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 VARS2Q5ST30 1063 aaKnown RBP13.17□□□□□ -0.3
HDAC4-206ENST00000460235 WSCD1Q658N2 575 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 FAM109BQ6ICB4 259 aaPredicted RBP13.17□□□□□ -0.3
HDAC4-206ENST00000460235 SPOPLQ6IQ16 392 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 SCARA5Q6ZMJ2 495 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 C4orf50Q6ZRC1 276 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 TMC6Q7Z403 805 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 LIMS2Q7Z4I7 341 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 VPS36Q86VN1 386 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 C2orf15Q8WU43 125 aaKnown RBP13.17□□□□□ -0.3
HDAC4-206ENST00000460235 RIN2Q8WYP3 895 aaPredicted RBP13.17□□□□□ -0.3
HDAC4-206ENST00000460235 SHC3Q92529 594 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 RABGGTAQ92696 567 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 C17orf80Q9BSJ5 609 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 GPR62Q9BZJ7 368 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 APOBEC3GQ9HC16 384 aaKnown RBP13.17□□□□□ -0.3
HDAC4-206ENST00000460235 CHST7Q9NS84 486 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 FNIP2Q9P278 1114 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 L1RE1Q9UN81 338 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 STXBP5LQ9Y2K9 1186 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 YBX2Q9Y2T7 364 aaKnown RBP13.17□□□□□ -0.3
HDAC4-206ENST00000460235 IRAK3Q9Y616 596 aa13.17□□□□□ -0.3
HDAC4-206ENST00000460235 AKR1B15C9JRZ8 316 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-206ENST00000460235 B4GALT3O60512 393 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 CILPO75339 1184 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 CXCL14O95715 111 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 ITGB1P05556 798 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 ADH1AP07327 375 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 MYOGP15173 224 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 CD58P19256 250 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 CA8P35219 290 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 SOX5P35711 763 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 PBX2P40425 430 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 PBX3P40426 434 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 SNX16P57768 344 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 PSMD5Q16401 504 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 SFMBT2Q5VUG0 894 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 IQCEQ6IPM2 695 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 GPR153Q6NV75 609 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 PPP1R2P3Q6NXS1 205 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 TMEM270Q6UE05 265 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 RTL10Q7L3V2 364 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 RNF168Q8IYW5 571 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-206ENST00000460235 OR8K1Q8NGG5 319 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 SPPL3Q8TCT6 385 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 POF1BQ8WVV4 589 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 ARNTL2Q8WYA1 636 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 TMEM176AQ96HP8 235 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 FAM84AQ96KN4 292 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 HEXIM2Q96MH2 286 aaKnown RBP13.16□□□□□ -0.3
HDAC4-206ENST00000460235 GANQ9H2C0 597 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 ZNF576Q9H609 170 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 SIX2Q9NPC8 291 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 NLRC4Q9NPP4 1024 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.16□□□□□ -0.3
HDAC4-206ENST00000460235 LMCD1Q9NZU5 365 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 PCDH10Q9P2E7 1040 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 CACNG4Q9UBN1 327 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 MTUS1Q9ULD2 1270 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 POLIQ9UNA4 740 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 CEP83Q9Y592 693 aa13.16□□□□□ -0.3
HDAC4-206ENST00000460235 I3L4J1 428 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 VDRP11473 427 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 TKTP29401 623 aaKnown RBP13.15□□□□□ -0.3
HDAC4-206ENST00000460235 KRT9P35527 623 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 NDUFV1P49821 464 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 PDE6CP51160 858 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 NDST1P52848 882 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 MRPL58Q14197 206 aaKnown RBP13.15□□□□□ -0.3
HDAC4-206ENST00000460235 SGO2Q562F6 1265 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 ZNF697Q5TEC3 545 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 TPGS2Q68CL5 300 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 CD300LGQ6UXG3 332 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 ZNF677Q86XU0 584 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 ARHGEF19Q8IW93 802 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 FAM71AQ8IYT1 594 aa13.15□□□□□ -0.3
HDAC4-206ENST00000460235 CRYBG2Q8N1P7 616 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms