RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CCDC13Q8IYE1 715 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 AFAP1L2Q8N4X5 818 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 ADAMTS17Q8TE56 1095 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 NSUN6Q8TEA1 469 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 NOC3LQ8WTT2 800 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 CPLX3Q8WVH0 158 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 SGCDQ92629 289 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 ANAPC16Q96DE5 110 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 UQCC2Q9BRT2 126 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 PI4K2AQ9BTU6 479 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 ISCA1Q9BUE6 129 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 OSBPL10Q9BXB5 764 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 NSRP1Q9H0G5 558 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 CCDC8Q9H0W5 538 aaPredicted RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 TUBA8Q9NY65 449 aaPredicted RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 CLEC1BQ9P126 229 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 GRID1Q9ULK0 1009 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 COG5Q9UP83 839 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 AKT3Q9Y243 479 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 PRELID1Q9Y255 219 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 MYRFQ9Y2G1 1151 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 CRYL1Q9Y2S2 319 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 CAB39Q9Y376 341 aaPredicted RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 FRMPD2Q68DX3 1309 aaPredicted RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 MSH6P52701 1360 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 PZPP20742 1482 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 LRRC9Q6ZRR7 1453 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 BCL9LQ86UU0 1499 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 SCAF11Q99590 1463 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 NHSL1Q5SYE7 1610 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 KDM5AP29375 1690 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 C17orf113A0A1B0GUU1 675 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 ANKRD34BA5PLL1 514 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 LRRC72A6NJI9 287 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 DYNC1I1O14576 645 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 ZSCAN9O15535 394 aaPredicted RBP5.87□□□□□ -1.47
VPS41-209ENST00000457055 CEP104O60308 925 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 RTN2O75298 545 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 USP1O94782 785 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 ITGB3P05106 788 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 HADHAP40939 763 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 MAGEA10P43363 369 aaPredicted RBP5.87□□□□□ -1.47
VPS41-209ENST00000457055 ETV1P50549 477 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 AP1B1Q10567 949 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 KIF5AQ12840 1032 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 BNIP1Q12981 228 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 GRM3Q14832 879 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 IQCB1Q15051 598 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 MTERF2Q49AM1 385 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 FCRLBQ6BAA4 426 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 KIAA1211LQ6NV74 962 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 POMZP3Q6PJE2 187 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 ETV3LQ6ZN32 361 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 B4GALNT4Q76KP1 1039 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 RNF180Q86T96 592 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 TPH2Q8IWU9 490 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 ZNF619Q8N2I2 560 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 LINC00482Q8N8I6 264 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 IPMKQ8NFU5 416 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 OTUD7AQ8TE49 926 aaPredicted RBP5.87□□□□□ -1.47
VPS41-209ENST00000457055 SSH3Q8TE77 659 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 ASB2Q96Q27 587 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 GORASP1Q9BQQ3 440 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 AP5M1Q9H0R1 490 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 STMN4Q9H169 189 aaPredicted RBP5.87□□□□□ -1.47
VPS41-209ENST00000457055 SYNCQ9H7C4 482 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 TRMT13Q9NUP7 481 aaKnown RBP5.87□□□□□ -1.47
VPS41-209ENST00000457055 SMPD4Q9NXE4 827 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 PPP1R14DQ9NXH3 145 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 IL1RAPL1Q9NZN1 696 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 MARCH2Q9P0N8 246 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 RSPH14Q9UHP6 348 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 ITGB1BP2Q9UKP3 347 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 CARD8Q9Y2G2 431 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 GPR52Q9Y2T5 361 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 GAKO14976 1311 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 NLRP1Q9C000 1473 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 TIAM1Q13009 1591 aa5.87□□□□□ -1.47
VPS41-209ENST00000457055 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.87□□□□□ -1.47
VPS41-209ENST00000457055 CHD2O14647 1828 aaKnown RBP5.86□□□□□ -1.47
VPS41-209ENST00000457055 AHDC1Q5TGY3 1603 aaPredicted RBP5.86□□□□□ -1.47
VPS41-209ENST00000457055 MAST1Q9Y2H9 1570 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 SYCP2Q9BX26 1530 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 NCOA2Q15596 1464 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 CYP2D7A0A087X1C5 515 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 H0Y626 953 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 M0R3H8 397 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 AP3B1O00203 1094 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 CETN3O15182 167 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 MAFKO60675 156 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 PALMO75781 387 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 EPN2O95208 641 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 KCNH1O95259 989 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 HSPA4LO95757 839 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 DDX58O95786 925 aaKnown RBP5.86□□□□□ -1.47
VPS41-209ENST00000457055 PDHA1P08559 390 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 VIMP08670 466 aaKnown RBP5.86□□□□□ -1.47
VPS41-209ENST00000457055 PLS3P13797 630 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 AKR1B1P15121 316 aa5.86□□□□□ -1.47
VPS41-209ENST00000457055 PSMA4P25789 261 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms