RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 URGCPQ8TCY9 931 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 SLC20A1Q8WUM9 679 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 KBTBD7Q8WVZ9 684 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 HERVK_113Q902F9 699 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 TAF4BQ92750 862 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 SENP8Q96LD8 212 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 MMS19Q96T76 1030 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 ELOVL4Q9GZR5 314 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 HAUS4Q9H6D7 363 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 MARCH5Q9NX47 278 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 CNTN6Q9UQ52 1028 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 PRG3Q9Y2Y8 225 aaPredicted RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 PTPRDP23468 1912 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 A0A0U1RQJ8 604 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 LCHNA4D1U4 455 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 GRXCR1A8MXD5 290 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 B3GAT3O94766 335 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 ARHGEF15O94989 841 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 GALTP07902 379 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 LINC00271P0C7V0 271 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 CHRNB2P17787 502 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 LMO2P25791 158 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 RPL9P32969 192 aaKnown RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 STAT1P42224 750 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 AARSP49588 968 aaKnown RBP eCLIP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 BCAR1P56945 870 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 PTK2Q05397 1052 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 MYO1EQ12965 1108 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 SHHQ15465 462 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 TSR1Q2NL82 804 aaKnown RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 TMEM270Q6UE05 265 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 CCDC150Q8NCX0 1101 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 ATRIPQ8WXE1 791 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 BAG1Q99933 345 aaPredicted RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 SYT11Q9BT88 431 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 IMPG2Q9BZV3 1241 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 GDAP2Q9NXN4 497 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 KANSL3Q9P2N6 904 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 PCDHB4Q9Y5E5 795 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 MRPL42Q9Y6G3 142 aaKnown RBP11.75□□□□□ -0.53
SCN9A-205ENST00000454569 MYO7AQ13402 2215 aa11.75□□□□□ -0.53
SCN9A-205ENST00000454569 CYB561D2O14569 222 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 ZNF263O14978 683 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 TPM1P09493 284 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 KRT5P13647 590 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 EIF4A3P38919 411 aaKnown RBP11.74□□□□□ -0.53
SCN9A-205ENST00000454569 KCNJ6P48051 423 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 ZNF132P52740 706 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 RAD23BP54727 409 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 TNNC1P63316 161 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 ASIC2Q16515 512 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 ASTE1Q2TB18 679 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-205ENST00000454569 SV2CQ496J9 727 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 RASIP1Q5U651 963 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 KIAA0319Q5VV43 1072 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 WSCD1Q658N2 575 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 DCLRE1AQ6PJP8 1040 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 FAM43BQ6ZT52 329 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-205ENST00000454569 TAS1R1Q7RTX1 841 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 NOP9Q86U38 636 aaKnown RBP11.74□□□□□ -0.53
SCN9A-205ENST00000454569 PALB2Q86YC2 1186 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 PDCL2Q8N4E4 241 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 SLC4A11Q8NBS3 891 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 RBBP8NLQ8NC74 664 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-205ENST00000454569 ZNF397Q8NF99 534 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-205ENST00000454569 LNX1Q8TBB1 728 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-205ENST00000454569 TFAP2BQ92481 460 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 DDX1Q92499 740 aaKnown RBP11.74□□□□□ -0.53
SCN9A-205ENST00000454569 IQCDQ96DY2 449 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 B3GALT6Q96L58 329 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 VN1R3Q9BXE9 311 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 GPR62Q9BZJ7 368 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 DPEP3Q9H4B8 488 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 NOCTQ9UK39 431 aaKnown RBP11.74□□□□□ -0.53
SCN9A-205ENST00000454569 MYO6Q9UM54 1294 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 MYO9BQ13459 2157 aa11.74□□□□□ -0.53
SCN9A-205ENST00000454569 HOXA2O43364 376 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 ATP2C2O75185 946 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 CILPO75339 1184 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 GJB5O95377 273 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 MYOGP15173 224 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 RFX1P22670 979 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 TBXAS1P24557 533 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-205ENST00000454569 PRKCIP41743 596 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 NDST1P52848 882 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 RABGGTBP53611 331 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 HTRA4P83105 476 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-205ENST00000454569 PSRC1Q6PGN9 363 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-205ENST00000454569 C17orf53Q8N3J3 647 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-205ENST00000454569 RSPH1Q8WYR4 309 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 SYN2Q92777 582 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-205ENST00000454569 ZNF560Q96MR9 790 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 FAM193BQ96PV7 902 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-205ENST00000454569 PCDHB18PQ96TA0 734 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 LBHD1Q9BQE6 289 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-205ENST00000454569 RTP3Q9BQQ7 232 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 NHEJ1Q9H9Q4 299 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-205ENST00000454569 SPTLC3Q9NUV7 552 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 TFR2Q9UP52 801 aa11.73□□□□□ -0.53
SCN9A-205ENST00000454569 R3HCC1Q9Y3T6 440 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms