RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ZFP37Q9Y6Q3 630 aaPredicted RBP13.72□□□□□ -0.21
PRPF40A-203ENST00000448428 MTMR11A4FU01 709 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 HUS1O60921 280 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 CST3P01034 146 aaPredicted RBP13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 TNNI1P19237 187 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 PNOCQ13519 176 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 TDGQ13569 410 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 KCNB1Q14721 858 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 SLC5A9Q2M3M2 681 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 POTEHQ6S545 545 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 BMP8AQ7Z5Y6 402 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 SLC9A9Q8IVB4 645 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 PDCL2Q8N4E4 241 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 SLC44A3Q8N4M1 653 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 PLEKHO2Q8TD55 490 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 TMEM174Q8WUU8 243 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 PBXIP1Q96AQ6 731 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 HPDLQ96IR7 371 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 ZNF512Q96ME7 567 aaPredicted RBP13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 FNBP1Q96RU3 617 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 CGRRF1Q99675 332 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 CORO1BQ9BR76 489 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 AVENQ9NQS1 362 aaPredicted RBP13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 L1RE1Q9UN81 338 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 MAPK8IP1Q9UQF2 711 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 MRPS23Q9Y3D9 190 aaKnown RBP13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 SNX9Q9Y5X1 595 aa13.71□□□□□ -0.21
PRPF40A-203ENST00000448428 ANHXE9PGG2 379 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 PRPF40AO75400 957 aaKnown RBP13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 NR3C1P04150 777 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 CASP4P49662 377 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 FAM160A1Q05DH4 1040 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 MYO1EQ12965 1108 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 HTR4Q13639 388 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 SOWAHAQ2M3V2 549 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 SLC39A12Q504Y0 691 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 PRSS36Q5K4E3 855 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 NPAS3Q8IXF0 933 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 HS6ST3Q8IZP7 471 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 ELMOD1Q8N336 334 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 TTC9BQ8N6N2 239 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 ING5Q8WYH8 240 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 NXPE3Q969Y0 559 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 CCDC34Q96HJ3 373 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 RPP25Q9BUL9 199 aaKnown RBP13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 CIZ1Q9ULV3 898 aaPredicted RBP13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 TRAF3IP3Q9Y228 551 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 R3HCC1Q9Y3T6 440 aaKnown RBP13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 YIPF1Q9Y548 306 aa13.7□□□□□ -0.22
PRPF40A-203ENST00000448428 NARSO43776 548 aaKnown RBP13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 SOAT2O75908 522 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 KIF20AO95235 890 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 CCR2P41597 374 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 ALDH1A3P47895 512 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 CLDN10P78369 228 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 IQCEQ6IPM2 695 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 PARM1Q6UWI2 310 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 LIMS2Q7Z4I7 341 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 OSTM1Q86WC4 334 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 TMEM86AQ8N2M4 240 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 GUF1Q8N442 669 aaKnown RBP13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 TOP6BLQ8N6T0 577 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 PARD3BQ8TEW8 1205 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 FGF14Q92915 247 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 TCEAL4Q96EI5 215 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 MCRS1Q96EZ8 462 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 TIGD1Q96MW7 591 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 DNAJC25Q9H1X3 360 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 DDX43Q9NXZ2 648 aaKnown RBP13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 HSFX1Q9UBD0 423 aa13.69□□□□□ -0.22
PRPF40A-203ENST00000448428 TRIOO75962 3097 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 LRRIQ3A6PVS8 624 aaPredicted RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 NRG2O14511 850 aaPredicted RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 GABRDO14764 452 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 CALUO43852 315 aaPredicted RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 GADD45BO75293 160 aaPredicted RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 PDGFBP01127 241 aaPredicted RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 MYL4P12829 197 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 CEBPBP17676 345 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 ACAT1P24752 427 aaKnown RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 EPHB3P54753 998 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 EPHA5P54756 1037 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 SMARCB1Q12824 385 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 PLD1Q13393 1074 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 CYP4A22Q5TCH4 519 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 PDZD4Q76G19 769 aaPredicted RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 DPH6Q7L8W6 267 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 SMYD4Q8IYR2 804 aaPredicted RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 DCP1BQ8IZD4 617 aaKnown RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 ERCC4Q92889 916 aaPredicted RBP13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 ACBD6Q9BR61 282 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 LRRC3Q9BY71 257 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 TMLHEQ9NVH6 421 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 DUSP12Q9UNI6 340 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 NUMBLQ9Y6R0 609 aa13.68□□□□□ -0.22
PRPF40A-203ENST00000448428 ZNF197O14709 1029 aa13.67□□□□□ -0.22
PRPF40A-203ENST00000448428 HCRTO43612 131 aa13.67□□□□□ -0.22
PRPF40A-203ENST00000448428 MOSPD3O75425 235 aa13.67□□□□□ -0.22
PRPF40A-203ENST00000448428 MICAL2O94851 1124 aa13.67□□□□□ -0.22
PRPF40A-203ENST00000448428 C4BPAP04003 597 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms