RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 UGT2A3Q6UWM9 527 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 SH3BP5LQ7L8J4 393 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 SLC13A5Q86YT5 568 aaPredicted RBP20.22■□□□□ 0.83
HMGA1-205ENST00000447654 LNX1Q8TBB1 728 aaPredicted RBP20.22■□□□□ 0.83
HMGA1-205ENST00000447654 DDI1Q8WTU0 396 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 FAM172AQ8WUF8 416 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 DNAJC1Q96KC8 554 aaKnown RBP20.22■□□□□ 0.83
HMGA1-205ENST00000447654 PNMA5Q96PV4 448 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 MRPS26Q9BYN8 205 aaKnown RBP20.22■□□□□ 0.83
HMGA1-205ENST00000447654 ALG6Q9Y672 507 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 SIPA1L1O43166 1804 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 PEX1O43933 1283 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 ZBED4O75132 1171 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 TM7SF2O76062 418 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 OR6B1O95007 311 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 SLC9A1P19634 815 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 PAX3P23760 479 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 PDK3Q15120 406 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 DACT2Q5SW24 774 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 LRRC8BQ6P9F7 803 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 PODNQ7Z5L7 613 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 DEPTORQ8TB45 409 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 TBCKQ8TEA7 893 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 SPOCK2Q92563 424 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 RAB34Q9BZG1 259 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 KLHL4Q9C0H6 718 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 NPHS2Q9NP85 383 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 ZNF646O15015 1829 aaPredicted RBP20.21■□□□□ 0.83
HMGA1-205ENST00000447654 CLPTM1O96005 669 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 ACTN1P12814 892 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 SLC16A2P36021 539 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 PTK6Q13882 451 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 LRRC41Q15345 812 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 DHRS4L2Q6PKH6 230 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 FLAD1Q8NFF5 587 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 FAM161BQ96MY7 647 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 TRABDQ9H4I3 376 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 JMJD4Q9H9V9 463 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 KANSL3Q9P2N6 904 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 HEY2Q9UBP5 337 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 FAM198AQ9UFP1 575 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 TBK1Q9UHD2 729 aa20.21■□□□□ 0.83
HMGA1-205ENST00000447654 SERPINB7O75635 380 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 CHKAP35790 457 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 TECP42680 631 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 NONOQ15233 471 aaKnown RBP eCLIP20.2■□□□□ 0.826e-7■□□□□ 10
HMGA1-205ENST00000447654 EPHA7Q15375 998 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 SIX1Q15475 284 aaPredicted RBP20.2■□□□□ 0.82
HMGA1-205ENST00000447654 RIPOR1Q6ZS17 1223 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 DHDDSQ86SQ9 333 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 ZDHHC14Q8IZN3 488 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 OLIG1Q8TAK6 271 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 SNX27Q96L92 541 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 ZDHHC15Q96MV8 337 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 SYT11Q9BT88 431 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 PDGFDQ9GZP0 370 aaPredicted RBP20.2■□□□□ 0.82
HMGA1-205ENST00000447654 KCTD10Q9H3F6 313 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 C6orf50Q9HD87 102 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 CROTQ9UKG9 612 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 ZNF711Q9Y462 761 aa20.2■□□□□ 0.82
HMGA1-205ENST00000447654 P4HA2O15460 535 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 TFAP2AP05549 437 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 ZNF543Q08ER8 600 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 LPIN1Q14693 890 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 TMED2Q15363 201 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 MAP7D1Q3KQU3 841 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 TMEM119Q4V9L6 283 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 PLEKHG4Q58EX7 1191 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 PACS1Q6VY07 963 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 KCTD1Q719H9 257 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 ADGRF4Q8IZF3 695 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 MARVELD2Q8N4S9 558 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 ALLCQ8N6M5 410 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 GRK7Q8WTQ7 553 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 PLGRKTQ9HBL7 147 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 BMP2KQ9NSY1 1161 aaPredicted RBP20.19■□□□□ 0.82
HMGA1-205ENST00000447654 HBS1LQ9Y450 684 aaKnown RBP20.19■□□□□ 0.82
HMGA1-205ENST00000447654 GREB1LQ9C091 1923 aaPredicted RBP20.19■□□□□ 0.82
HMGA1-205ENST00000447654 FOXO6A8MYZ6 492 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 TRMUO75648 421 aaKnown RBP20.19■□□□□ 0.82
HMGA1-205ENST00000447654 IL1BP01584 269 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 ARFIP2P53365 341 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 AOC3Q16853 763 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 DNAAF5Q86Y56 855 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 SCFD1Q8WVM8 642 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 DNAJC19Q96DA6 116 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 CFAP57Q96MR6 1250 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 NRDE2Q9H7Z3 1164 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 SIX2Q9NPC8 291 aa20.19■□□□□ 0.82
HMGA1-205ENST00000447654 H0YIN7 160 aa20.18■□□□□ 0.82
HMGA1-205ENST00000447654 STK10O94804 968 aaKnown RBP20.18■□□□□ 0.82
HMGA1-205ENST00000447654 FUT4P22083 530 aa20.18■□□□□ 0.82
HMGA1-205ENST00000447654 GNA11P29992 359 aa20.18■□□□□ 0.82
HMGA1-205ENST00000447654 HALP42357 657 aa20.18■□□□□ 0.82
HMGA1-205ENST00000447654 PPIDQ08752 370 aaKnown RBP20.18■□□□□ 0.82
HMGA1-205ENST00000447654 TNIP1Q15025 636 aa20.18■□□□□ 0.82
HMGA1-205ENST00000447654 NEK8Q86SG6 692 aa20.18■□□□□ 0.82
HMGA1-205ENST00000447654 REXO1Q8N1G1 1221 aaKnown RBP20.18■□□□□ 0.82
HMGA1-205ENST00000447654 BIRC8Q96P09 236 aa20.18■□□□□ 0.82
HMGA1-205ENST00000447654 PPP1R1BQ9UD71 204 aaPredicted RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms