RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 FAM163BP0C2L3 166 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 LAMP2P13473 410 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 PCSK1P29120 753 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 ATICP31939 592 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 PPP1R2P41236 205 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 WNT7BP56706 349 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 TWF1Q12792 350 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 DUSP4Q13115 394 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 STIM1Q13586 685 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 NFE2Q16621 373 aaPredicted RBP11.25□□□□□ -0.61
MCF2L-216ENST00000439475 NFIL3Q16649 462 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 CENPPQ6IPU0 288 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 MTSS1LQ765P7 747 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 PDZD4Q76G19 769 aaPredicted RBP11.25□□□□□ -0.61
MCF2L-216ENST00000439475 BMP8AQ7Z5Y6 402 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 ITIH5Q86UX2 942 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 ENGASEQ8NFI3 743 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 OR5B17Q8NGF7 314 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 SYAP1Q96A49 352 aaPredicted RBP11.25□□□□□ -0.61
MCF2L-216ENST00000439475 ACBD6Q9BR61 282 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 CORO1BQ9BR76 489 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 GPR88Q9GZN0 384 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 ZCWPW1Q9H0M4 648 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 KCNK12Q9HB15 430 aa11.25□□□□□ -0.61
MCF2L-216ENST00000439475 AVENQ9NQS1 362 aaPredicted RBP11.25□□□□□ -0.61
MCF2L-216ENST00000439475 DDX43Q9NXZ2 648 aaKnown RBP11.25□□□□□ -0.61
MCF2L-216ENST00000439475 DENND4AQ7Z401 1863 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 MTMR11A4FU01 709 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 TMEM221A6NGB7 291 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 M0R296 226 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 MAPK13O15264 365 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 MICAL2O94851 1124 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 CLSTN1O94985 981 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 CST3P01034 146 aaPredicted RBP11.24□□□□□ -0.61
MCF2L-216ENST00000439475 ASGR2P07307 311 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 OR4Q2P0C623 313 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 KRT13P13646 458 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 NR2F2P24468 414 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 TNNC1P63316 161 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 NTHL1P78549 312 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 ADAM9Q13443 819 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 BIRC3Q13489 604 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 PNOCQ13519 176 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 SNW1Q13573 536 aaKnown RBP11.24□□□□□ -0.61
MCF2L-216ENST00000439475 VEPH1Q14D04 833 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 TAF12Q16514 161 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 MGAT5BQ3V5L5 792 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 SLC39A12Q504Y0 691 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 ZNF658Q5TYW1 1059 aaPredicted RBP11.24□□□□□ -0.61
MCF2L-216ENST00000439475 SUGP1Q8IWZ8 645 aaKnown RBP11.24□□□□□ -0.61
MCF2L-216ENST00000439475 FEZF2Q8TBJ5 459 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 FAM200AQ8TCP9 573 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 TMC2Q8TDI7 906 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 PARD3BQ8TEW8 1205 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 FGF13Q92913 245 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 PBXIP1Q96AQ6 731 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 MYADMQ96S97 322 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 MMS19Q96T76 1030 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 TSG101Q99816 390 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 ASAH2Q9NR71 780 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 SIX4Q9UIU6 781 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 MAPK8IP1Q9UQF2 711 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 SLC27A5Q9Y2P5 690 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 PCDHB5Q9Y5E4 795 aa11.24□□□□□ -0.61
MCF2L-216ENST00000439475 UNC80Q8N2C7 3258 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 FAM86C2PA6NEL3 165 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 IKBKBO14920 756 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 CETN3O15182 167 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 FGF19O95750 216 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 STAU1O95793 577 aaKnown RBP11.23□□□□□ -0.61
MCF2L-216ENST00000439475 PSMC2P35998 433 aaKnown RBP11.23□□□□□ -0.61
MCF2L-216ENST00000439475 MAPRE1Q15691 268 aaKnown RBP11.23□□□□□ -0.61
MCF2L-216ENST00000439475 INTS8Q75QN2 995 aaKnown RBP11.23□□□□□ -0.61
MCF2L-216ENST00000439475 ADGRF2Q8IZF7 708 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 PDCL2Q8N4E4 241 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 ATAD1Q8NBU5 361 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 OR10T2Q8NGX3 314 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 CXorf38Q8TB03 319 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 TMEM209Q96SK2 561 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 SEPT5Q99719 369 aaPredicted RBP11.23□□□□□ -0.61
MCF2L-216ENST00000439475 SNX25Q9H3E2 840 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 HCFC1R1Q9NWW0 138 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 GDE1Q9NZC3 331 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 L1RE1Q9UN81 338 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 HCN4Q9Y3Q4 1203 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 YIPF1Q9Y548 306 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 PCDHA5Q9Y5H7 936 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 DOCK6Q96HP0 2047 aa11.23□□□□□ -0.61
MCF2L-216ENST00000439475 SPTBN5Q9NRC6 3674 aaKnown RBP11.22□□□□□ -0.61
MCF2L-216ENST00000439475 GABRDO14764 452 aa11.22□□□□□ -0.61
MCF2L-216ENST00000439475 C4BPAP04003 597 aaKnown RBP11.22□□□□□ -0.61
MCF2L-216ENST00000439475 MYL4P12829 197 aa11.22□□□□□ -0.61
MCF2L-216ENST00000439475 P4HA1P13674 534 aa11.22□□□□□ -0.61
MCF2L-216ENST00000439475 TRIM21P19474 475 aaKnown RBP11.22□□□□□ -0.61
MCF2L-216ENST00000439475 COL9A1P20849 921 aa11.22□□□□□ -0.61
MCF2L-216ENST00000439475 GNL1P36915 607 aaPredicted RBP11.22□□□□□ -0.61
MCF2L-216ENST00000439475 VAMP7P51809 220 aa11.22□□□□□ -0.61
MCF2L-216ENST00000439475 UBE2HP62256 183 aa11.22□□□□□ -0.61
MCF2L-216ENST00000439475 RPL10AP62906 217 aaKnown RBP11.22□□□□□ -0.61
MCF2L-216ENST00000439475 ENPEPQ07075 957 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms